Escherichia coli MS 84-1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli MS 84-1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of its common hosts, indicating its adaptation to a host-associated habitat. E. coli MS 84-1 is classified as a facultative anaerobe, allowing it to survive in both aerobic and anaerobic environments, which enhances its versatility in various biological contexts. The ability of E. coli MS 84-1 to inhabit host-associated environments suggests a potential role in symbiotic relationships or interactions with the host microbiome. Its facultative anaerobic nature may also contribute to its adaptability in fluctuating oxygen conditions within the host, possibly facilitating metabolic processes that are advantageous for survival and persistence. Overall, the traits of E. coli MS 84-1 underscore its adaptability and significance in host-associated ecosystems, where it may play an important role in nutrient cycling and microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainMS 84-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli MS 84-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli MS 84-1


Gene Summary

Adenine Count

1305775 bp

Thymine Count

1309175 bp

Guanine Count

1346974 bp

Cytosine Count

1326002 bp

Genome Length

5287926 bp

Protein-coding Genes

5501 genes

Non-Coding Genes

344 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+88275 - 88287Not Available
Phi92_gp134HMPREF9536_00095Not Available+88329 - 8983455033.2
Phi92_gp135HMPREF9536_00096Not Available+89854 - 9056725920.3
site-specific recombinase, phage integrase familyHMPREF9536_00097Not Available-90649 - 9198351030.5
Putative prophage integraseHMPREF9536_00098P37326+92254 - 9346845732.3
hypothetical proteinHMPREF9536_00099Not Available-93633 - 938488010.95
transcriptional regulator, alpa familyHMPREF9536_00100Not Available+93896 - 940997850.43
hypothetical proteinHMPREF9536_00101Not Available+94099 - 9453016381.6
AntirepressorHMPREF9536_00102Not Available+94543 - 9537631122.2
hypothetical proteinHMPREF9536_00103Not Available+95369 - 955516853.15

Displaying genes 1 – 10 of 5845 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

342 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 342 metabolites