Bacteroides ovatus SD CMC 3f

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides ovatus SD CMC 3f is a Gram-negative, anaerobic bacterium that is part of the Bacteroides genus, known for its prominent role in the human gut microbiome. This microbe thrives in environments devoid of oxygen, which is characteristic of many members of the Bacteroides group, allowing it to contribute to the fermentation processes that are essential for the digestion of complex carbohydrates. As an anaerobe, B. ovatus SD CMC 3f relies on alternative metabolic pathways that do not involve oxygen, engaging in the fermentation of dietary fibers, which can produce short-chain fatty acids beneficial to host health. These metabolic products play a crucial role in maintaining gut homeostasis and may influence host immune responses, highlighting the importance of B. ovatus SD CMC 3f in human gut ecology. This strain represents a specific adaptation within its ecological niche, potentially contributing to the breakdown of resistant starches and other polysaccharides, which may have implications for dietary interventions aimed at promoting gut health. Further research into the metabolic capabilities of Bacteroides ovatus SD CMC 3f could provide insights into its functional contributions to the microbiome and its interactions with host physiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides ovatus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides ovatus SD CMC 3f


Gene Summary

Adenine Count

1950643 bp

Thymine Count

1983045 bp

Guanine Count

1439557 bp

Cytosine Count

1402032 bp

Genome Length

6775279 bp

Protein-coding Genes

5246 genes

Non-Coding Genes

114 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1509838 - 1509851Not Available
3_nc_021794: site specific recombinase, tyrosineCUY_0961Not Available+1510071 - 151162159330.5
conserved domain proteinCUY_0962Not Available-1511692 - 151218018872.6
conserved hypothetical proteinCUY_0963Not Available-1512437 - 151425168840.4
Hypothetical proteinCUY_0964Not Available+1515291 - 151594724788.6
hypothetical proteinCUY_0965Not Available-1516205 - 151675021107.4
conserved domain proteinCUY_0966Not Available-1516707 - 151700311955.4
Terminase small subunitCUY_0967Not Available+1517158 - 151754714338.4
Terminase large subunitCUY_0968Not Available+1517544 - 151916961242.0
Portal proteinCUY_0969Not Available+1519169 - 152040146049.5

Displaying genes 1 – 10 of 5360 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

43 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002759dTDP-beta-L-rhamnoseC16H24N2O15P2Not availableNot available
Average546.316Da
Monoisotopic546.066289237Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003889(S)-2-ureidoglycineC3H7N3O3Chemical structure of (S)-2-ureidoglycineNot available
Average133.106Da
Monoisotopic133.048741105Da
BASm0004157menaquinol-8C51H74O2Chemical structure of menaquinol-8Not available
Average719.1321Da
Monoisotopic718.568881612Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da

Displaying 1–10 of 43 metabolites