Pyramidobacter piscolens W5455

rodanaerobic

Kingdom

Thermotogati

Phylum

Synergistota

Class

Synergistia

Order

Synergistales

Family

Dethiosulfovibrionaceae

Genus

Pyramidobacter

Description

Pyramidobacter piscolens W5455 is a Gram-negative, rod-shaped anaerobic bacterium that thrives optimally at a temperature of 29.0°C. This microbe's anaerobic nature suggests it occupies environments where oxygen is limited or absent, potentially influencing its metabolic pathways and ecological interactions. The rod shape of Pyramidobacter piscolens W5455 may confer advantages in motility and nutrient acquisition in its specific habitat, although the precise ecological niche it occupies remains to be characterized. Given its optimal growth temperature, it is likely adapted to moderate thermal environments, which may be indicative of its natural habitat in soil or sediment layers where conditions are stable and conducive for sustained anaerobic activity. Further exploration of Pyramidobacter piscolens W5455 could provide insights into its role in biogeochemical cycles, particularly in carbon and nitrogen cycling, where anaerobic bacteria are known to play crucial roles. Understanding the metabolic capabilities of this organism may reveal its contributions to organic matter degradation and nutrient recycling in its ecosystem.

Taxonomy

KingdomThermotogati
PhylumSynergistota
ClassSynergistia
OrderSynergistales
FamilyDethiosulfovibrionaceae
GenusPyramidobacter
SpeciesPyramidobacter piscolens
StrainW5455

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pyramidobacter piscolens W5455


Gene Summary

Adenine Count

514164 bp

Thymine Count

514721 bp

Guanine Count

766818 bp

Cytosine Count

766310 bp

Genome Length

2562014 bp

Protein-coding Genes

2714 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Tail proteinHMPREF7215_2801Not Available+471354 - 4716269830.81
Tail proteinHMPREF7215_2802Not Available+471623 - 47270238700.6
Putative baseplate proteinHMPREF7215_2803Not Available+472699 - 47316616287.5
hypothetical proteinHMPREF7215_2804Not Available+473179 - 4733074911.87
Gp118HMPREF7215_2805Not Available+473410 - 4735534692.46
Tail terminatorHMPREF7215_2806Not Available+473560 - 47395514329.2
Baseplate wedge proteinHMPREF7215_2807Not Available+473952 - 47426311096.1
Baseplate proteinHMPREF7215_2808Not Available+474253 - 47538639535.1
Tail proteinHMPREF7215_2809Not Available+475379 - 47602623269.8
Tail proteinHMPREF7215_2810Not Available+476039 - 47746949424.2

Displaying genes 1 – 10 of 2818 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

328 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 328 metabolites