Vibrio mimicus VM603

Gram-positiveFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio mimicus VM603 is a Gram-positive bacterium characterized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. This organism is part of the Vibrio genus, which is commonly associated with aquatic habitats. The Gram-positive nature of V. mimicus VM603 suggests the presence of a thick peptidoglycan layer in its cell wall, which is a distinctive feature compared to its Gram-negative relatives. As a facultative anaerobe, V. mimicus VM603 can utilize oxygen for respiration when available, but it can also switch to fermentation or anaerobic respiration in the absence of oxygen. This metabolic flexibility may confer advantages in varying environmental conditions, particularly in fluctuating oxygen levels often found in marine ecosystems. The ecological role of V. mimicus VM603 may include participation in nutrient cycling within its habitat, potentially contributing to the degradation of organic matter. Additionally, its adaptability to different oxygen conditions may enable it to colonize diverse niches within aquatic environments, where oxygen availability can vary significantly. Understanding the metabolic capabilities of V. mimicus VM603 offers insights into its potential interactions within microbial communities and its role in ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio mimicus
StrainVM603

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio mimicus VM603
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio mimicus VM603


Gene Summary

Adenine Count

1155993 bp

Thymine Count

1174025 bp

Guanine Count

1025925 bp

Cytosine Count

994766 bp

Genome Length

4350709 bp

Protein-coding Genes

3763 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinVMB_00010Not Available-94 - 2796826.36
hypothetical proteinVMB_00020Not Available-445 - 104423019.1
glyoxalase/bleomycin resistance protein/dioxygenaseVMB_00030Not Available-1637 - 201113046.7
hypothetical proteinVMB_00040Not Available-2088 - 23188667.99
hypothetical proteinVMB_00050Not Available-2610 - 365939491.1
hypothetical proteinVMB_00060Not Available-3895 - 41349363.04
hypothetical proteinVMB_00070Not Available-4532 - 486112267.3
d-alanyl-d-alanine dipeptidaseVMB_00080Not Available+5201 - 582123612.3
polar amino acid abc transporter, permease proteinVMB_00090Not Available+8269 - 906629638.7
amino acid abc transporter, permease proteinVMB_00100Not Available+9942 - 1083833282.2

Displaying genes 1 – 10 of 3832 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

296 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–10 of 296 metabolites