Bacteroides sp. D2

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides sp. D2 is a Gram-negative bacterium that plays a significant role in the microbiota of various environments. Members of the Bacteroides genus are typically anaerobic, thriving in oxygen-depleted conditions, which is consistent with the ecological niches they occupy, primarily in the gastrointestinal tracts of mammals. These bacteria are known for their ability to metabolize complex carbohydrates, contributing to the breakdown of dietary fibers and the production of short-chain fatty acids, which are beneficial for host health. The Gram-negative cell wall structure of Bacteroides sp. D2 is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which can influence the bacterium's interactions within its environment. This structural feature is essential for its survival and functionality in the competitive microbial communities typically found in the gut, where it may engage in symbiotic relationships with host organisms. Bacteroides sp. D2's metabolic capabilities and its adaptation to anaerobic conditions suggest that it may play a crucial role in nutrient cycling and energy harvest from indigestible carbohydrates, which can enhance the overall metabolic efficiency of the host. This indicates that Bacteroides sp. D2 is not only a participant in the microbial ecosystem but may also contribute to the maintenance of gut health through its metabolic activities, showcasing the importance of microbial diversity in supporting complex biological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides sp. D2
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides sp. D2


Gene Summary

Adenine Count

2022594 bp

Thymine Count

2008662 bp

Guanine Count

1446199 bp

Cytosine Count

1437302 bp

Genome Length

6914757 bp

Protein-coding Genes

5123 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1127528 - 1127571Not Available
1_nc_021790: structural proteinBSGG_4482Not Available-1141915 - 114405080470.3
Tail length tape measure proteinBSGG_4481Not Available-1144047 - 1147223115220.0
hypothetical proteinBSGG_4480Not Available-1147237 - 114798628773.8
1_nc_021791: phage tail proteinBSGG_4479Not Available-1148050 - 114853216949.0
hypothetical proteinBSGG_4478Not Available-1148566 - 114893413858.4
Hypothetical proteinBSGG_4477Not Available-1148934 - 114937116378.6
Gp9BSGG_4476Not Available-1149368 - 114969412379.1
Head-tail connector iiBSGG_4475Not Available-1149691 - 114998110813.0
Putative major capsid protein and peptidase u35BSGG_4474Not Available-1150004 - 115125145634.0

Displaying genes 1 – 10 of 5275 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

313 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 313 metabolites