Parabacteroides johnsonii DSM 18315

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides johnsonii DSM 18315 is a Gram-negative bacterium characterized by its distinct morphological and biochemical traits. This species belongs to the genus Parabacteroides, which encompasses various anaerobic bacteria commonly found in the gastrointestinal tract of mammals. As a member of the gut microbiota, P. johnsonii plays a role in the fermentation of complex carbohydrates, contributing to the overall metabolic processes of the host. The Gram-negative nature of P. johnsonii indicates a specific structural composition of its cell wall, which includes a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature is significant, as it influences not only the bacterium's interaction with its environment but also its response to antibiotics and other antimicrobial agents. While specific metabolic capabilities and ecological roles of P. johnsonii remain to be fully elucidated, its presence in the gut microbiome suggests potential implications for host health and digestion. The bacterium may participate in the modulation of gut health by aiding in the breakdown of dietary fibers and influencing the overall composition of the microbial community. Further research is necessary to explore the functional roles of P. johnsonii in the gut and its interactions with other microbiota, which may reveal insights into its contributions to host metabolism and immune function.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides johnsonii
StrainDSM 18315

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides johnsonii DSM 18315


Gene Summary

Adenine Count

1283431 bp

Thymine Count

1243972 bp

Guanine Count

1021391 bp

Cytosine Count

1063444 bp

Genome Length

4612238 bp

Protein-coding Genes

4515 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
glycosyl hydrolase family 2, sugar binding domain proteinPRABACTJOHN_00001T2KNA8+1 - 196975062.7
Ncrna_class:rnase_p_rnaNot AvailableNot Available+5 - 244Not Available
16s ribosomal rnaNot AvailableNot Available+137 - 1655Not Available
23s ribosomal rnaNot AvailableNot Available+2237 - 5111Not Available
transporter, major facilitator family proteinPRABACTJOHN_00002Not Available-1966 - 319545920.4
hypothetical proteinPRABACTJOHN_00003Not Available+3308 - 448644572.9
efflux abc transporter, permease proteinPRABACTJOHN_00004Not Available+4626 - 652470776.2
5s ribosomal rnaNot AvailableNot Available+5226 - 5335Not Available
efflux abc transporter, permease proteinPRABACTJOHN_00005Not Available+6505 - 706821195.1
putative bacteriocin export abc transporter, lactococcin 972 groupPRABACTJOHN_00006Not Available+7219 - 791625495.8

Displaying genes 1 – 10 of 1706 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

561 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 561 metabolites