Parabacteroides merdae

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae is a Gram-negative, rod-shaped bacterium that thrives in a moderate temperature range, between 22°C and 37°C, categorizing it as a mesophilic microbe. This bacterium is a heterotroph, meaning it derives its energy from the breakdown of organic compounds, specifically glucose and other carbohydrates. It is also a chemoheterotroph, as it uses chemical reactions to convert its energy source into ATP. As a chemoheterotroph, P. merdae produces its energy through the process of cellular respiration, specifically aerobic respiration. This means it requires oxygen to produce energy, classifying it as an obligate aerobe. This microbe is found in various body sites across all species, including the gastrointestinal tract, skin, and respiratory tract, where it plays a crucial role in the breakdown of complex nutrients. P. merdae is known to form biofilms, complex communities of microorganisms attached to surfaces, which enable it to colonize and adapt to its environment. Its ability to form biofilms also allows it to survive in the face of antimicrobial therapy and antibiotics. In addition to its significance in the human body, P. merdae has been found to be involved in various diseases, including inflammatory bowel disease, diarrhea, and even cancer. Its role in these diseases is complex and multifaceted, and further research is needed to fully understand its contribution. Studies have also shown that P. merdae produces adhesins, molecules that allow it to attach to host cells, and has been found to induce inflammation and modulate the immune response. Its ability to interact with the host immune system makes it an important target for future research and potential therapeutic applications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae

Accession NumberQSEF00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3278 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
3_nc_021789: hypothetical proteinDWZ59_01280Not Available-273850 - 27422414462.3
antitoxin hicbDWZ59_01285Not Available-274226 - 27461814785.7
Ycfa-like family protein, putative toxin componentDWZ59_01290Not Available-274653 - 2748416959.53
hypotheticalDWZ59_01295Not Available-275009 - 2752006652.67
Lambda repressor-like dna-binding domain proteinDWZ59_01300Not Available-275864 - 27615410645.0
Hypothetical proteinDWZ59_01305Not Available+276345 - 27667412687.7
hypothetical proteinDWZ59_01310Not Available+276722 - 2769679316.43
Hnh endonuclease family proteinDWZ59_01315Not Available+277041 - 27758921008.3
Phage portal proteinDWZ59_01320Not Available-277592 - 27909157783.1
Phage terminase large subunitDWZ59_01325Not Available-279103 - 28037148249.0

Displaying genes 1 – 10 of 22316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites