Alistipes putredinis DSM 17216

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes putredinis DSM 17216 is a Gram-negative bacterium that has garnered attention for its role within the human microbiome. This anaerobic organism is characterized by its ability to thrive in oxygen-limited environments, a trait that aligns with its isolation from human fecal samples. The bacterium's Gram-negative status indicates a distinctive cell wall structure, which may play a role in its interactions within the gut ecosystem. As a member of the Alistipes genus, A. putredinis is noted for its potential involvement in the metabolism of complex carbohydrates, contributing to the overall functionality of the gut microbiota. This metabolic capability suggests that A. putredinis may participate in the fermentation processes that help maintain gut health and balance. Although specific metabolic pathways have not been detailed, the presence of this microorganism in human fecal matter implies a relationship with dietary fiber and other substrates. The unique ecological insight that emerges from the presence of Alistipes putredinis is its potential role in gut homeostasis. By participating in anaerobic fermentation and possibly influencing the availability of short-chain fatty acids, this bacterium may contribute to the maintenance of a healthy intestinal environment, underscoring its importance in the study of human microbiome dynamics. Further research could elucidate its specific functions and interactions within the complex microbial community of the gut.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes putredinis
StrainDSM 17216

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes putredinis DSM 17216


Gene Summary

Adenine Count

566830 bp

Thymine Count

624780 bp

Guanine Count

708676 bp

Cytosine Count

649592 bp

Genome Length

2549878 bp

Protein-coding Genes

2704 genes

Non-Coding Genes

99 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Type ii restriction endonucleaseALIPUT_01186Not Available-1098989 - 110000539294.5
IntegraseALIPUT_01187Not Available-1100103 - 110131146990.8
hypothetical proteinALIPUT_01188Not Available-1101313 - 110173816783.4
hypothetical proteinALIPUT_01189Not Available+1101880 - 11020085401.95
IntegraseALIPUT_01190Not Available+1102024 - 110324446245.6
Phage head morphogenesis proteinALIPUT_01191Not Available-1103652 - 110474042192.9
Phage portal proteinALIPUT_01192Not Available-1104750 - 110615653603.0
Large subunit terminase terlALIPUT_01193Not Available-1106168 - 110758354676.4
Hth domain containing proteinALIPUT_01194Not Available-1107638 - 110808416594.6
Parb-like nucleaseALIPUT_01195Not Available-1108108 - 110883027901.2

Displaying genes 1 – 10 of 2803 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

403 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 403 metabolites