Xenorhabdus nematophila AN6/1

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Xenorhabdus

Description

Xenorhabdus nematophila AN6/1 is a Gram-negative, rod-shaped bacterium that is nonsporulating and exhibits facultative anaerobic metabolism. This microbe is primarily associated with hosts, indicating a specific ecological niche that may involve interactions with nematodes or other organisms. As a facultative anaerobe, X. nematophila AN6/1 can thrive in both aerobic and anaerobic environments, which may confer advantages in fluctuating conditions encountered within host organisms or their environments. The nonsporulating characteristic suggests that this strain relies on vegetative growth rather than forming spores for survival, which can influence its ecological strategy and interactions with other microbiota. The host-associated habitat of X. nematophila AN6/1 highlights its potential role in symbiotic relationships, particularly with nematodes, where it may contribute to the metabolic processes or provide benefits to its host. This relationship could play a significant role in nutrient cycling or biocontrol in soil ecosystems, reflecting the broader ecological implications of its presence. Understanding the traits of X. nematophila AN6/1 can aid in elucidating its functional role within host-associated environments and its potential application in biological control strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusXenorhabdus
SpeciesXenorhabdus nematophila
StrainAN6/1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Xenorhabdus nematophila AN6/1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xenorhabdus nematophila AN6/1


Gene Summary

Adenine Count

42600 bp

Thymine Count

40955 bp

Guanine Count

36812 bp

Cytosine Count

34192 bp

Genome Length

154559 bp

Protein-coding Genes

185 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
para family proteinXNC2_RS19600Not Available+151 - 93628669.7
parb/repb/spo0j family partition proteinXNC2_RS19605Not Available+940 - 211543443.0
helix-turn-helix domain-containing proteinXNC2_RS19610Not Available+2164 - 243610313.5
n-6 dna methylaseXNC2_RS19615Not Available-2488 - 312323496.1
hypothetical proteinXNC2_RS23400Not Available-3211 - 33545491.77
hypothetical proteinXNC2_RS19620Not Available+3674 - 405113680.4
hypothetical proteinXNC2_RS19630Not Available+4282 - 44888019.5
hypothetical proteinXNC2_RS19635Not Available-4516 - 492014533.3
dna topoisomerase 3XNC2_RS19640Not Available-4931 - 712080868.4
hypothetical proteinXNC2_RS19645Not Available-7120 - 73538487.08

Displaying genes 1 – 10 of 185 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm00034704-(phosphooxy)-L-threonineC4H8NO7PChemical structure of 4-(phosphooxy)-L-threonineNot available
Average213.083Da
Monoisotopic213.0049358Da
BASm0003537(R)-3-hydroxy-2-oxo-4-phosphooxybutanoateC4H4O8PChemical structure of (R)-3-hydroxy-2-oxo-4-phosphooxybutanoateNot available
Average211.043Da
Monoisotopic210.9660248Da
BASm0009632(2S)-3-(4-hydroxyphenyl)-2-isocyanopropanoateC10H8NO3Chemical structure of (2S)-3-(4-hydroxyphenyl)-2-isocyanopropanoateNot available
Average190.179Da
Monoisotopic190.050966702Da
BASm00107383-phosphoshikimateC7H8O8PChemical structure of 3-phosphoshikimateNot available
Average251.108Da
Monoisotopic250.997324955Da

Displaying 1–6 of 6 metabolites