Sphingobium ummariense RL-3

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium ummariense RL-3 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This microbe is categorized as non-spore-forming, which indicates its reliance on favorable environmental conditions for survival and reproduction rather than the formation of resilient spores. The Gram-negative classification of S. ummariense RL-3 suggests a complex cell wall structure characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may confer certain advantages in various ecological niches, such as resistance to certain antibiotics and the ability to thrive in diverse environments. The aerobic nature of this organism points to its dependence on oxygen for metabolic processes, potentially influencing its habitat selection and interactions within microbial communities. The optimal growth temperature of 29.0°C positions S. ummariense RL-3 within a mesophilic range, suggesting a potential preference for environments that maintain moderate temperatures. This characteristic can be significant in understanding its ecological role, particularly in terrestrial or aquatic ecosystems where temperature fluctuations occur. In summary, the combination of these traits indicates that Sphingobium ummariense RL-3 may play a crucial role in the degradation of organic materials in oxygen-rich environments, contributing to nutrient cycling and the maintenance of ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium ummariense
StrainRL-3

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium ummariense RL-3


Gene Summary

Adenine Count

831480 bp

Thymine Count

831934 bp

Guanine Count

1547934 bp

Cytosine Count

1542693 bp

Genome Length

4754053 bp

Protein-coding Genes

4608 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative integraseM529_05455Not Available-1073818 - 107504146517.0
hypothetical proteinM529_05460Not Available-1075431 - 107604521364.8
Is5 family transposase orfbM529_05465Not Available-1076136 - 107652514925.0
Is5 family transposase orfaM529_05470Not Available-1076546 - 107689313257.0
Arac family transcriptional regulatorM529_05475Not Available+1077164 - 107749011542.9
Putative radical sam superfamily proteinM529_05480Not Available-1077700 - 107867435790.9
Hypothetical proteinM529_05485Not Available-1078671 - 107926420822.9
Gp273M529_05490Not Available+1079340 - 108007426935.3
hypothetical proteinM529_05495Not Available+1080074 - 108105735655.5
inorganic polyphosphate/atp-nad kinaseM529_05500Not Available+1081065 - 108195832688.9

Displaying genes 1 – 10 of 4712 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites