Phocaeicola coprocola CAG:162 str. MGS:162

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola coprocola CAG:162 str. MGS:162 is a Gram-negative, strictly anaerobic bacterium. This microbe is characterized by its inability to utilize oxygen for growth, positioning it within the anoxic environments typical of the gastrointestinal tracts of various animals, where it likely contributes to the complex microbial ecosystem. The Gram-negative nature of P. coprocola indicates the presence of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may influence its interactions with the host microbiota. Given its anaerobic requirements, P. coprocola likely thrives in environments that are rich in organic matter and devoid of oxygen, engaging in fermentation processes that contribute to the breakdown of complex carbohydrates. This metabolic capability suggests a role in nutrient cycling within the gut, potentially aiding in the digestion of dietary fibers and other indigestible substrates. Understanding the specific metabolic pathways employed by P. coprocola could provide insights into its ecological niche and its potential interactions with other gut microbiota members. The presence of such anaerobic microbes underscores the importance of microbial diversity in maintaining gut health and function, as they can influence the overall metabolic output of the gut microbiome and the host's nutritional status.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola coprocola
StrainCAG:162 MGS:162

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola coprocola CAG:162 str. MGS:162


Gene Summary

Adenine Count

926557 bp

Thymine Count

930438 bp

Guanine Count

639133 bp

Cytosine Count

642769 bp

Genome Length

3138897 bp

Protein-coding Genes

2478 genes

Non-Coding Genes

34 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
uncharacterized proteinBN509_00092Not Available-804 - 113912820.7
thioredoxinBN509_00093Not Available-1164 - 148111553.8
dna polymerase iii alpha subunitBN509_00094Not Available-1526 - 5323143789.0
phosphatidylserine decarboxylase proenzymeBN509_00095Not Available+5510 - 620526475.7
putative cdp-diacylglycerol-serine o-phosphatidyltransferaseBN509_00096Not Available+6226 - 693025805.1
uncharacterized proteinBN509_00097Not Available+6986 - 727310558.5
transcriptional regulator asnc familyBN509_00098Not Available-7397 - 787918330.1
iga peptidase m64BN509_00099Not Available+8014 - 930348711.6
acetyltransferase gnat familyBN509_00100Not Available+9317 - 986221501.7
uncharacterized proteinBN509_00101Not Available-10401 - 1086517865.9

Displaying genes 1 – 10 of 2512 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

19 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00031102-dehydro-3-deoxy-D-galactonateC6H10O6Chemical structure of 2-dehydro-3-deoxy-D-galactonateNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0005442glycyl-L-asparagineC6H11N3O4Not availableNot available
Average189.171Da
Monoisotopic189.074955846Da
BASm0005445L-methionyl-L-alanineC8H16N2O3SChemical structure of L-methionyl-L-alanineNot available
Average220.29Da
Monoisotopic220.088163557Da
BASm0006316hydrogenobyrinateC45H60N4O14Chemical structure of hydrogenobyrinateNot available
Average880.989Da
Monoisotopic880.4106026Da
BASm0006317hydrogenobyrinate a,c-diamideC45H62N6O12Chemical structure of hydrogenobyrinate a,c-diamideNot available
Average879.021Da
Monoisotopic878.4425715Da
BASm0014067p-Aminobenzoic acidC7H7NO2Chemical structure of p-Aminobenzoic acid150-13-0
Average137.136Da
Monoisotopic137.047678473Da
BASm0014113N-alpha-Acetyl-L-citrullineC8H15N3O4Chemical structure of N-alpha-Acetyl-L-citrullineNULL
Average217.2224Da
Monoisotopic217.106255983Da
BASm0014310LysoPG(18:1(9Z)/0:0)C24H47O9PChemical structure of LysoPG(18:1(9Z)/0:0)NULL
Average510.605Da
Monoisotopic510.295770091Da

Displaying 1–10 of 19 metabolites