Phocaeicola coprocola DSM 17136

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola coprocola DSM 17136 is a Gram-negative, strictly anaerobic bacterium. This organism is notable for its anaerobic metabolic capabilities, which allow it to thrive in environments devoid of oxygen. The Gram-negative classification indicates that P. coprocola possesses a complex cell wall structure characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, a feature that may contribute to its survival in diverse anaerobic habitats. As an anaerobe, P. coprocola is likely adapted to conditions found in the gastrointestinal tracts of various hosts, where oxygen levels are typically low. This adaptation may facilitate its role in the fermentation processes associated with the breakdown of organic matter, potentially contributing to the complex microbial communities that inhabit such environments. The ability of P. coprocola to exist in anaerobic settings might also suggest its involvement in specific biochemical pathways that are vital for nutrient cycling within its ecological niche. Understanding the metabolic processes and interactions of this organism can provide deeper insights into the dynamics of microbial ecosystems, particularly those associated with the digestive systems of animals where it may play a role in maintaining gut health and influencing host-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola coprocola
StrainDSM 17136

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola coprocola DSM 17136


Gene Summary

Adenine Count

1246873 bp

Thymine Count

1250211 bp

Guanine Count

898938 bp

Cytosine Count

899595 bp

Genome Length

4295617 bp

Protein-coding Genes

4284 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Excisionase-like proteinBACCOP_01110Not Available-1082624 - 108297713725.3
hypothetical proteinBACCOP_01111Not Available-1083219 - 108419638118.4
AttlNot AvailableNot Available+1083992 - 1084003Not Available
Putative integraseBACCOP_01112Not Available-1084177 - 108531644553.5
Sigma70/sigmaf-like proteinBACCOP_01113Not Available-1085371 - 108635438323.8
Hypothetical proteinBACCOP_01114Not Available-1087045 - 108737712588.6
Hypothetical proteinBACCOP_01115Not Available-1087374 - 108844741422.5
hypothetical proteinBACCOP_01116Not Available+1088580 - 10887175169.24
hypothetical proteinBACCOP_01117Not Available-1088746 - 108923718998.1
AmidaseBACCOP_01118Not Available-1089241 - 108982821866.0

Displaying genes 1 – 10 of 4400 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites