Ruminococcus sp. CAG:403 str. MGS:403

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. CAG:403 str. MGS:403 is a Gram-positive, cocci-shaped bacterium that is part of the diverse microbial community found in the gastrointestinal tract of ruminants. As a member of the genus Ruminococcus, it is presumed to play a role in the degradation of complex carbohydrates, contributing to the fermentation processes that are essential for the digestion of plant materials in these hosts. The cocci morphology suggests that this bacterium may form clusters or chains, which is characteristic of many members within this genus. The Gram-positive nature of Ruminococcus sp. CAG:403 str. MGS:403 implies the presence of a thick peptidoglycan layer in its cell wall, a feature that can influence its resistance to environmental stresses and its interactions with other gut microbes. While specific metabolic pathways and enzymatic capabilities of Ruminococcus sp. CAG:403 str. MGS:403 are not detailed in the provided traits, its association with fiber degradation indicates a potential for producing short-chain fatty acids that can be beneficial for the host's health. The unique combination of its cocci shape and Gram-positive characteristics may facilitate diverse interactions within the gut microbiome, contributing to the overall stability and functionality of the microbial ecosystem in ruminants. Understanding the role of such bacteria can provide insights into the complex interplay of gut microbiota and their impacts on host nutrition and health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. CAG:403
StrainMGS:403

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. CAG:403 str. MGS:403


Gene Summary

Adenine Count

597133 bp

Thymine Count

598410 bp

Guanine Count

507020 bp

Cytosine Count

496997 bp

Genome Length

2199684 bp

Protein-coding Genes

1936 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Phage holinBN645_01120Not Available-299899 - 30033315382.3
Asch domain-containing proteinBN645_01121Not Available-300408 - 3005274364.46
putative uncharacterized proteinBN645_01122Not Available-300544 - 30080710217.8
Tail proteinBN645_01123Not Available-300810 - 30261264298.6
Hypothetical proteinBN645_01124Not Available-302630 - 30341829198.9
Putative baseplate-j proteinBN645_01125Not Available-303415 - 30461443629.8
Hypothetical proteinBN645_01126Not Available-304614 - 30501815918.8
Hypothetical proteinBN645_01127Not Available-305015 - 30571924632.8
Putative phage cell wall hydrolaseBN645_01128Not Available-305712 - 30669237342.8
Putative cell wall hydrolase/lysm proteinBN645_01129Not Available-306708 - 30739125522.7

Displaying genes 1 – 10 of 2002 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

135 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da

Displaying 1–10 of 135 metabolites