Agrobacterium rhizogenes NBRC 13257

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Martinezella

Description

Agrobacterium rhizogenes NBRC 13257 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial habitats and exhibits aerobic metabolic characteristics. This species is known to optimally grow at a temperature of 25.0°C, indicating its preference for moderate environmental conditions. As an aerobic organism, A. rhizogenes actively requires oxygen for its survival and growth, which aligns with its ecological niche in soil and other terrestrial environments. The unique physiological traits of A. rhizogenes suggest its potential role in soil ecosystems, possibly contributing to nutrient cycling or plant-microbe interactions. While specific pathogenicity and ecological roles are not detailed in the provided information, the presence of this bacterium in terrestrial habitats implies a potential involvement in plant root interactions, which is characteristic of the Agrobacterium genus. This insight points to A. rhizogenes NBRC 13257's potential importance in understanding microbial dynamics in soil environments and its interactions with plant systems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusMartinezella
SpeciesMartinezella rhizogenes
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium rhizogenes NBRC 13257
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium rhizogenes NBRC 13257


Gene Summary

Adenine Count

1405055 bp

Thymine Count

1418806 bp

Guanine Count

2122155 bp

Cytosine Count

2098457 bp

Genome Length

7044473 bp

Protein-coding Genes

6581 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+502698 - 502710Not Available
Terminase small subunitRRH01S_01_04970Not Available+509271 - 50965713956.9
Terminase large subunit-like proteinRRH01S_01_04980Not Available+509623 - 51152769231.4
Portal proteinRRH01S_01_04990Not Available+511527 - 51278345760.5
Putative prohead proteaseRRH01S_01_05000Not Available+512780 - 51339122058.9
CapsidRRH01S_01_05010Not Available+513484 - 51476446545.9
P007RRH01S_01_05020Not Available+514823 - 5150447819.11
Dna packaging/head-tail-connectorRRH01S_01_05030Not Available+515004 - 51554920098.5
Head-tail-adapterRRH01S_01_05050Not Available+515730 - 51608612911.4
hypothetical proteinRRH01S_01_05060Not Available+516083 - 5162536755.21

Displaying genes 1 – 10 of 6682 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da

Displaying 1–2 of 2 metabolites