Pseudomonas putida DOT-T1E

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida DOT-T1E is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism is a heterotroph, deriving its energy from organic compounds, and it is commonly found in soil and wastewater environments. As a facultative anaerobe, Pseudomonas putida DOT-T1E can adapt to varying oxygen levels, allowing it to thrive in both aerobic and anaerobic conditions. The metabolic versatility of Pseudomonas putida DOT-T1E is a key characteristic that enables it to exploit a wide range of organic substrates, making it particularly valuable in bioremediation efforts. This adaptability allows the bacterium to play a significant role in the degradation of pollutants in contaminated environments, thereby contributing to ecological balance and sustainability. Its presence in wastewater treatment systems highlights its potential for applications in environmental microbiology, particularly in the biotransformation of hazardous compounds. The ability of Pseudomonas putida DOT-T1E to survive and function effectively in diverse habitats underscores its significance in microbial ecology and its potential utility in biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainDOT-T1E

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida DOT-T1E
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida DOT-T1E


Gene Summary

Adenine Count

1201150 bp

Thymine Count

1213598 bp

Guanine Count

1930834 bp

Cytosine Count

1915115 bp

Genome Length

6260702 bp

Protein-coding Genes

5695 genes

Non-Coding Genes

158 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1498610 - 1498677Not Available
Hypothetical proteinT1E_RS06875Not Available-1512770 - 151335721510.2
hypothetical proteinT1E_RS06880Not Available-1513354 - 15135487391.03
hypothetical proteinT1E_RS06885Not Available-1513545 - 151396115274.9
hypothetical proteinT1E_RS06890Not Available-1514392 - 15146168829.57
Hypothetical proteinT1E_RS06895Not Available-1515401 - 151624631739.9
hypothetical proteinT1E_RS06900Not Available+1516349 - 15165707857.47
Hypothetical proteinT1E_RS06905Not Available+1516600 - 15168097847.56
Hypothetical proteinT1E_RS06910Not Available+1516828 - 15170407929.64
Phage antirepressor proteinT1E_RS06915Not Available+1517212 - 151799729528.7

Displaying genes 1 – 10 of 5853 in total

Metabolites

18 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0001885Tetra-mu3-sulfido-tetrairon(1+)Fe4S4Chemical structure of Tetra-mu3-sulfido-tetrairon(1+)Not available
Average351.62Da
Monoisotopic351.62748Da
BASm00020002,3-dihydroxy-p-cumateC10H11O4Chemical structure of 2,3-dihydroxy-p-cumateNot available
Average195.195Da
Monoisotopic195.0662824Da
BASm0002146(1R,2S)-1,2-dihydronaphthalene-1,2-diolC10H10O2Chemical structure of (1R,2S)-1,2-dihydronaphthalene-1,2-diolNot available
Average162.1852Da
Monoisotopic162.0680796Da
BASm00038332-hydroxychromene-2-carboxylateC10H7O4Not availableNot available
Average191.163Da
Monoisotopic191.034982285Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014037Fumaric acidC4H4O4Chemical structure of Fumaric acid110-17-8
Average116.0722Da
Monoisotopic116.010958616Da
BASm0014038Malic acidC4H6O5Chemical structure of Malic acid97-67-6
Average134.0874Da
Monoisotopic134.021523302Da
BASm0014042Oxoglutaric acidC5H6O5Chemical structure of Oxoglutaric acid328-50-7
Average146.0981Da
Monoisotopic146.021523302Da

Displaying 1–10 of 18 metabolites