Escherichia coli PCN033

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli PCN033 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both oxygen-rich and oxygen-depleted environments. E. coli PCN033 exhibits optimal growth at a temperature of 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, suggesting an adaptation to a host-associated habitat. The specific ecological niche of E. coli PCN033 is indicative of its potential role in the microbial community of its host, where it may contribute to various metabolic processes. The facultative anaerobic nature of this microbe allows it to exploit diverse environments within the host, potentially playing a role in nutrient acquisition and gut homeostasis. Understanding the traits of E. coli PCN033 can provide insights into the complex interactions between host organisms and their associated microbiota, which are crucial for maintaining overall health and functionality of the host ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainPCN033

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli PCN033
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli PCN033


Gene Summary

Adenine Count

1229002 bp

Thymine Count

1229083 bp

Guanine Count

1264457 bp

Cytosine Count

1265415 bp

Genome Length

4987957 bp

Protein-coding Genes

4442 genes

Non-Coding Genes

391 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Gp70PPECC33_RS04645P0AAZ6+996229 - 99757249628.8
serine--trna ligasePPECC33_RS04650A7ZJW2+997663 - 99895548416.8
AttlNot AvailableNot Available+998161 - 998173Not Available
Hok/gef family proteinPPECC33_RS04655Not Available-999261 - 9994015254.64
Ogr/delta-like zinc finger family proteinPPECC33_RS04665Not Available-999593 - 9998539692.39
Bacteriop2 gpd proteinPPECC33_RS04670P21679-999896 - 100100541107.8
Tail sheath family proteinPPECC33_RS04675P85993+1001163 - 100234743489.5
Major tail tube proteinPPECC33_RS04680P85988+1002347 - 100285918795.4
Tail e family proteinPPECC33_RS04685Not Available+1002915 - 100328913466.1
Gpe family tail proteinPPECC33_RS04690Not Available+1003298 - 10034535743.69

Displaying genes 1 – 10 of 5020 in total

Metabolites

306 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 306 metabolites