Bacteroides nordii CL02T12C05

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides nordii CL02T12C05 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic conditions, specifically classified as an obligate anaerobe. This microbe is part of the Bacteroides genus, which is predominantly found within the human gastrointestinal tract, where it plays a crucial role in the breakdown of complex carbohydrates and contributes to gut health. As a Gram-negative organism, Bacteroides nordii CL02T12C05 possesses a thin peptidoglycan layer and an outer membrane rich in lipopolysaccharides, which can influence its interactions with the human immune system. Its rod shape assists in motility, allowing it to navigate through the viscous environment of the intestines. Preferring moderately warm temperatures that align with the human body (around 37°C), this bacterium is well-adapted to the intestinal ecosystem, where it coexists with other microbial species. Bacteroides nordii CL02T12C05 is classified as a chemoheterotroph, meaning it obtains energy by consuming organic compounds, particularly carbohydrates derived from dietary fibers. The presence of this microbe in the gut is essential for fermenting these compounds, producing short-chain fatty acids that are beneficial for host metabolism and colonic health. This microbe is noteworthy not only for its involvement in digestion but also for its potential role in health and disease. Bacteroides species have been implicated in gut homeostasis and may influence conditions such as obesity and inflammatory bowel disease. Furthermore, the relationship between gut microbiota, including Bacteroides nordii CL02T12C05, and the host immune response continues to be an area of extensive research, highlighting the complexity and significance of this microbe within the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides nordii
StrainCL02T12C05

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides nordii CL02T12C05


Gene Summary

Adenine Count

1646276 bp

Thymine Count

1730882 bp

Guanine Count

1212528 bp

Cytosine Count

1117902 bp

Genome Length

5707589 bp

Protein-coding Genes

4420 genes

Non-Coding Genes

87 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinHMPREF1068_00001Not Available+1 - 1866917.73
23s ribosomal rnaNot AvailableNot Available+1 - 2220Not Available
5s ribosomal rnaNot AvailableNot Available+56 - 165Not Available
23s ribosomal rnaNot AvailableNot Available+246 - 3130Not Available
hypothetical proteinHMPREF1068_00002Not Available+258 - 4226052.44
hypothetical proteinHMPREF1068_00003Not Available+579 - 144534553.5
16s ribosomal rnaNot AvailableNot Available+2874 - 4384Not Available
hypothetical proteinHMPREF1068_00004Not Available-1868 - 298041473.7
16s ribosomal rnaNot AvailableNot Available+3784 - 5294Not Available
hypothetical proteinHMPREF1068_00005Not Available-3042 - 409439950.2

Displaying genes 1 – 10 of 4507 in total

Metabolites

455 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da

Displaying 1–10 of 455 metabolites