Prevotella nigrescens ATCC 33563

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Prevotella

Description

Prevotella nigrescens ATCC 33563 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic conditions, categorizing it as an obligate anaerobe. This microbe is part of the larger Prevotella genus, which is primarily known for its role in human oral and gut microbiota. The optimal growth temperature for P. nigrescens is around 37°C, which aligns with the body temperature of warm-blooded hosts, indicating its adaptation to the human environment. As a chemoheterotroph, P. nigrescens obtains its energy and carbon from organic compounds, typically deriving from the breakdown of dietary polysaccharides and proteins in the digestive tract. Prevotella nigrescens inhabits various body sites, predominantly found in the oral cavity and gastrointestinal tract of humans. It can also be present in other mucosal surfaces, demonstrating its ability to colonize diverse environments within the human body. The prevalence of P. nigrescens in the oral microbiome is particularly noteworthy, as it plays a role in maintaining the balance of microbial communities while also being associated with periodontal diseases when dysbiosis occurs. This microorganism is also implicated in various clinical conditions, including abscess formation, respiratory infections, and systemic diseases, underscoring its clinical relevance. Notably, P. nigrescens can contribute to the formation of biofilms, which protect the microbial community from the host immune response and antibiotics, making infections difficult to treat. Consequently, understanding its biology and interactions within the host environment provides insights into its role in health and disease, emphasizing the importance of anaerobic bacteria in human microbiota balance.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusPrevotella
SpeciesPrevotella nigrescens
StrainATCC 33563

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Prevotella nigrescens ATCC 33563


Gene Summary

Adenine Count

747817 bp

Thymine Count

751486 bp

Guanine Count

555600 bp

Cytosine Count

557327 bp

Genome Length

2612230 bp

Protein-coding Genes

2421 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
16s ribosomal rnaNot AvailableNot Available+42 - 1561Not Available
23s ribosomal rnaNot AvailableNot Available+157 - 3061Not Available
Ncrna_class:otherNot AvailableNot Available+167 - 320Not Available
hypothetical proteinHMPREF9419_0001Not Available+336 - 4675164.62
glycyl-trna synthetase beta subunitHMPREF9419_0002Not Available+522 - 207259909.1
peptidyl-prolyl cis-trans isomeraseHMPREF9419_0003Not Available+2101 - 279325723.4
hypothetical proteinHMPREF9419_0004Not Available+2869 - 432652429.5
5s ribosomal rnaNot AvailableNot Available+3169 - 3241Not Available
deda family proteinHMPREF9419_0005Not Available+4362 - 499723680.2
hypothetical proteinHMPREF9419_0006Not Available-5120 - 52454982.23

Displaying genes 1 – 10 of 2471 in total

Metabolites

83 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001885Tetra-mu3-sulfido-tetrairon(1+)Fe4S4Chemical structure of Tetra-mu3-sulfido-tetrairon(1+)Not available
Average351.62Da
Monoisotopic351.62748Da
BASm0002759dTDP-beta-L-rhamnoseC16H24N2O15P2Not availableNot available
Average546.316Da
Monoisotopic546.066289237Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm0003645UDP-4-amino-4-deoxy-beta-L-arabinoseC14H22N3O15P2Chemical structure of UDP-4-amino-4-deoxy-beta-L-arabinoseNot available
Average534.2831Da
Monoisotopic534.0526151Da

Displaying 1–10 of 83 metabolites