Salmonella enterica subsp. enterica serovar Alachua str. R6-377

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Salmonella

Description

Salmonella enterica subsp. enterica serovar Alachua str. R6-377 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions found within host organisms. As a chemoorganotroph, S. enterica serovar Alachua utilizes organic compounds as its energy source, indicating a reliance on host-derived nutrients for growth and survival. The specific habitat of this strain is host-associated, suggesting an ecological niche that may involve interactions with the host's microbiota or immune system. Given its microaerophilic nature, S. enterica serovar Alachua likely occupies environments within the host that have limited oxygen availability, which could influence its metabolic processes and interactions with other microbial species present. Understanding the unique adaptations of Salmonella enterica serovar Alachua str. R6-377, particularly its growth in microaerophilic conditions within a host, may provide insights into its ecological role and potential responses to host immune mechanisms. This context is crucial for further investigations into its biology and the implications for host-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusSalmonella
SpeciesSalmonella enterica
Strainsubsp. enterica serovar Alachua R6-377

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Salmonella enterica subsp. enterica serovar Alachua str. R6-377
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Salmonella enterica subsp. enterica serovar Alachua str. R6-377


Gene Summary

Adenine Count

1117000 bp

Thymine Count

1114739 bp

Guanine Count

1219440 bp

Cytosine Count

1219623 bp

Genome Length

4671261 bp

Protein-coding Genes

5096 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Tail fiber assembly proteinLTSEALA_0816Q71TD6+627847 - 62838320541.4
Tail proteinLTSEALA_0817P26700-628974 - 63075262451.6
Tail protein iLTSEALA_0818P26701-630749 - 63125819304.9
Baseplate assembly protein jLTSEALA_0819Not Available-631347 - 6314634096.67
hypothetical proteinLTSEALA_0820Not Available+631464 - 63223129591.3
Baseplate wedge subunitLTSEALA_0821P51768-632242 - 63260112906.3
Baseplate assembly protein vLTSEALA_0822P31340-632598 - 63317620730.5
P2 gps-like tail completion proteinLTSEALA_0823Not Available-633245 - 6334818946.77
Virion morphogenesis proteinLTSEALA_0824Not Available-633596 - 6337305239.56
P2 gpr-like tail completion proteinLTSEALA_0825P36933-633723 - 63415416197.1

Displaying genes 1 – 10 of 5164 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

318 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 318 metabolites