Helicobacter pylori PeCan4

Gram-negativeSpirillaMotileAerobic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter is a gram-negative, slow-growing organism. H. pylori has importance as a common human pathogen. Helicobacter pylori is composed of a single circular chromosome with 1,667,867 base pairs, containing about 1590 coding regions (TIGR, 2004).Helicobacter is a spiral shaped organism with flagella. It has a potent multisubunit urease enzyme that enables it to survive in acidic pH conditions and colonize the gastric environment (TIGR, 2004). H. pylori utilizes the enzyme urease to convert urea into bicarbonate and ammonia to combat the low acidity of the stomach. The mixing of the two extreme pH levels creates a neutralized protective cloud around the H. pylori, allowing it to survive in the stomach (Helicobacter Foundation, 2004).Helicobacter is able to live in the acidity of the stomach and duodenum, living on the mucus lining of the stomach, causing several health problems for the host (Helicobacter Foundation, 2004). Helicobacter can also be seen in animals such as cheetahs, dogs, cats, and ferrets (J. Solnick et al. 2004).Until the discovery of Helicobacter in 1982, ulcers were thought to be caused by stress. Now it is known that ulcers, in addition to gastritis, are caused by a bacterial infection of H. pylori. Though relatively easy to treat with antibiotics, H. pylori can be a risk factor for gastric cancer if it becomes a long-term infection (D. J. Kelly, 2004).The body's natural defenses cannot combat H. pylori because white and killer T cells cannot easily get through the stomach lining. The defense cells eventually die, spilling their superoxide radicals on stomach linig cells, on which H. pylori can feed (Helicobacter Foundation, 2004). (From http://microbewiki.kenyon.edu/index.php/Helicobacter) (MicrobeWiki: Helicobacter)

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainPeCan4

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori PeCan4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Helicobacter pylori PeCan4


Gene Summary

Adenine Count

492899 bp

Thymine Count

502064 bp

Guanine Count

314345 bp

Cytosine Count

320243 bp

Genome Length

1629557 bp

Protein-coding Genes

1525 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinHPPC_RS07840Not Available+240 - 164355974.0
fic family proteinHPPC_RS07845Not Available-1697 - 241628160.7
hypothetical proteinHPPC_RS07850Not Available-2406 - 268110601.9
plasmid mobilization proteinHPPC_RS07855Not Available+2852 - 318712871.7
relaxase/mobilization nuclease domain-containing proteinHPPC_RS07860Not Available+3177 - 515978149.1
abc transporter atp-binding proteinHPPC_RS07865Not Available-5166 - 693567907.3
duf4135 domain-containing proteinHPPC_RS07870Not Available-6923 - 847961060.5
transcription antitermination factor nusbHPPC_RS00005Not Available-11 - 42715520.0
6,7-dimethyl-8-ribityllumazine synthaseHPPC_RS00010Not Available-429 - 89916959.6
3-deoxy-8-phosphooctulonate synthaseHPPC_RS00015Not Available-909 - 173930296.7

Displaying genes 1 – 10 of 1577 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites