Bacteroides fluxus YIT 12057

Gram-negativerodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fluxus YIT 12057 is a gram-negative, rod-shaped bacterium that thrives in a mesophilic temperature range, is classified as a chemoheterotroph, and is an obligate anaerobe. This microbe is predominantly found in the human gut, where it plays a crucial role in the digestion of complex carbohydrates and the maintenance of gut health. Bacteroides fluxus is typically one of the many species of the Bacteroides genus that inhabit various body sites, including the intestines, oral cavity, and to a lesser extent, other regions such as the skin and respiratory tract. As a gram-negative bacterium, Bacteroides fluxus possesses a thin peptidoglycan layer surrounded by an outer membrane primarily composed of lipopolysaccharides, which can contribute to its virulence and influence immune responses. Its rod shape allows for efficient motility in the viscous environments of the gut, facilitating its interactions with other microbes and the host’s mucosal surfaces.Being a chemoheterotroph, Bacteroides fluxus relies on organic compounds obtained from the diet or from other gut microbes for energy and carbon. Its obligate anaerobic nature means that it thrives in environments devoid of oxygen, which is typical of the human gastrointestinal tract. Here, it engages in fermentation processes that contribute to the formation of short-chain fatty acids, essential for colon health and metabolic regulation. Bacteroides fluxus is also noteworthy due to its potential involvement in various health conditions, including obesity and inflammatory bowel disease. Its ability to break down dietary fibers and produce beneficial metabolites underscores its significance in human nutrition and the intricate balance of the gut microbiome. The exploration of this microbe continues to reveal its critical role in human health and disease prevention.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fluxus
StrainYIT 12057

Profile

Physiology
Gram staining propertiesNegative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides fluxus YIT 12057


Gene Summary

Adenine Count

1168553 bp

Thymine Count

1188558 bp

Guanine Count

1006445 bp

Cytosine Count

967207 bp

Genome Length

4330763 bp

Protein-coding Genes

3921 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
16s ribosomal rnaNot AvailableNot Available+28 - 1540Not Available
hypothetical proteinHMPREF9446_00001G8JZS4+391 - 255381542.4
23s ribosomal rnaNot AvailableNot Available+1999 - 4878Not Available
putative amidophosphoribosyltransferaseHMPREF9446_00002P00497+2710 - 411952285.6
peptidase tHMPREF9446_00003Q5LFT7+4358 - 558145329.0
aminomethyltransferaseHMPREF9446_00004Q5LFT6+5616 - 670139830.9
peptidase, m48 familyHMPREF9446_00006Not Available-6822 - 834257751.8
hypothetical proteinHMPREF9446_00005Not Available+8317 - 84876430.09
ribosomal protein l31HMPREF9446_00007A6L0Y7-8496 - 87479525.38
endonuclease/exonuclease/phosphatase family proteinHMPREF9446_00008Not Available+8928 - 994138696.7

Displaying genes 1 – 10 of 3983 in total

Metabolites

665 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 665 metabolites