Waddlia chondrophila WSU 86-1044

Gram-negativeNon-motile

Kingdom

Pseudomonadati

Phylum

Chlamydiota

Class

Chlamydiia

Order

Parachlamydiales

Family

Waddliaceae

Genus

Waddlia

Description

This obligatory intracellular bacteria is suspected to be an agent of miscarriage in humans and ruminants. Strain WSU 86-1044 was isolated in 1986 at the Washington Animal Disease Diagnostic Laboratory (hence the genus name) from tissues of a first-trimester aborted bovine foetus; it grows in macrophages as well as in Acanthamoeba castellanii. Unlike other Chlamydia sequenced to date 5% of the genome encodes repetitive sequences; other Chlamydia have almost no repetitive DNA. It encodes a number of virulence factors specific for resistance to host or environmental stresses including a putative carbonate permease, heavy metal exporters and multidrug efflux pumps. It is less metabolically dependent on its host than other Chlamydiae, as it encodes the capacity to synthesize some nucleotides, amino acids, lipids and other cofactors (adapted from PMID 20531937). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumChlamydiota
ClassChlamydiia
OrderParachlamydiales
FamilyWaddliaceae
GenusWaddlia
SpeciesWaddlia chondrophila
StrainWSU 86-1044

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatHostAssociated
Biotic relationshipNot Available
Host(s)Cow
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityYes

Genome Summary

Waddlia chondrophila WSU 86-1044


Gene Summary

Adenine Count

595725 bp

Thymine Count

594062 bp

Guanine Count

465340 bp

Cytosine Count

461185 bp

Genome Length

2116312 bp

Protein-coding Genes

1868 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
is256 family transposaseWCW_RS00005Not Available+386 - 163947641.5
hypothetical proteinWCW_RS10335Not Available+1978 - 21215595.93
type ii toxin-antitoxin system death-on-curing family toxinWCW_RS09845Not Available+2118 - 239910322.4
hypothetical proteinWCW_RS10065Not Available-2303 - 288422357.2
hypothetical proteinWCW_RS00025Not Available-3258 - 34678159.64
hggxstg domain-containing proteinWCW_RS09850Not Available-3460 - 36968840.6
hypothetical proteinWCW_RS00030Not Available-3700 - 416417066.7
isas1 family transposaseWCW_RS00035Not Available+4449 - 562444929.1
is256 family transposaseWCW_RS00040P35884+5641 - 604815457.8
polyprenyl synthetase family proteinWCW_RS00050Q08291-6560 - 744432029.4

Displaying genes 1 – 10 of 1935 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1681 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1681 metabolites