Sphingobium sp. SYK-6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. SYK-6
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. SYK-6

NC_015974.1NC_015976.1

Gene Summary

Adenine Count

727103 bp

Thymine Count

718748 bp

Guanine Count

1375590 bp

Cytosine Count

1377891 bp

Genome Length

4199332 bp

Protein-coding Genes

3854 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
replication initiation proteinSLG_RS19395Not Available+76 - 116440282.2
aaa family atpaseSLG_RS19400Not Available+1360 - 256243967.8
parb/repb/spo0j family partition proteinSLG_RS19405Not Available+2610 - 362337503.0
hypothetical proteinSLG_RS19410Not Available+3688 - 403812806.5
res family nad+ phosphorylaseSLG_RS19415Not Available-4083 - 476625358.8
antitoxin xre-like helix-turn-helix domain-containing proteinSLG_RS19420Not Available-4766 - 516414662.8
hypothetical proteinSLG_RS19425Not Available-5261 - 642741458.0
site-specific integraseSLG_RS19430Not Available+6574 - 781244716.9
sdr family oxidoreductaseSLG_RS19435Not Available-8159 - 877021621.2
lpd7 domain-containing proteinSLG_RS19445Not Available+8869 - 975231341.3

Displaying genes 1 – 10 of 4113 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

11 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000686vanillateC8H7O4Chemical structure of vanillateNot available
Average167.1388Da
Monoisotopic167.0344337Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm00019773,4-dihydroxybenzoateC7H5O4Chemical structure of 3,4-dihydroxybenzoateNot available
Average153.114Da
Monoisotopic153.019332221Da
BASm0002727(1E)-4-oxobut-1-ene-1,2,4-tricarboxylateC7H3O7Chemical structure of (1E)-4-oxobut-1-ene-1,2,4-tricarboxylateNot available
Average199.096Da
Monoisotopic198.9895232Da
BASm00031792-hydroxy-4-oxobutane-1,2,4-tricarboxylateC7H5O8Chemical structure of 2-hydroxy-4-oxobutane-1,2,4-tricarboxylateNot available
Average217.111Da
Monoisotopic217.0000879Da
BASm00033374-hydroxy-4-methyl-2-oxoglutarateC6H6O6Chemical structure of 4-hydroxy-4-methyl-2-oxoglutarateNot available
Average174.109Da
Monoisotopic174.0175351Da
BASm00033572-oxo-2H-pyran-4,6-dicarboxylateC7H2O6Chemical structure of 2-oxo-2H-pyran-4,6-dicarboxylateNot available
Average182.088Da
Monoisotopic181.9862349Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da

Displaying 1–10 of 11 metabolites