Bacteroides clarus

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides clarus is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in all body sites of various species, including the human gut, mouth, and skin, and is an obligate anaerobe. The gram-negative characteristic is due to the composition of its cell wall, which consists of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. Its rod-shaped morphology allows it to maintain a large surface area, facilitating the uptake of nutrients from its surroundings. As a mesophilic microbe, Bacteroides clarus grows best in temperatures between 20-45°C, making it well-suited to the human body's normal temperature range.As a chemoheterotroph, Bacteroides clarus relies on chemical reactions to produce energy and requires organic compounds as a source of carbon and energy. This is in contrast to autotrophic microbes, which can produce their own food using light or chemical energy. The presence of Bacteroides clarus in all body sites is a testament to its ability to adapt and thrive in diverse environments. Its obligate anaerobic nature means that it cannot survive in the presence of oxygen, and therefore, is typically found in areas with low oxygen levels, such as the gut. ↵Bacteroides clarus plays a crucial role in the breakdown and utilization of complex polysaccharides in the human gut, contributing to the maintenance of a healthy gut microbiome. Its unique characteristics and abilities have led researchers to investigate its potential as a probiotic agent, with studies exploring its use in the prevention and treatment of various diseases, including inflammatory bowel disease and obesity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides clarus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides clarus


Gene Summary

Adenine Count

1151390 bp

Thymine Count

1159125 bp

Guanine Count

959910 bp

Cytosine Count

947149 bp

Genome Length

4217574 bp

Protein-coding Genes

3424 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hypothetical proteinB5F97_06925Not Available+1768790 - 176958430571.1
hypothetical proteinB5F97_06930Not Available+1769609 - 176989310967.2
Hypothetical proteinB5F97_06935Not Available+1769890 - 17701509541.49
hypothetical proteinB5F97_06940Not Available+1770147 - 17703748700.6
Hypothetical proteinB5F97_06945Not Available+1770395 - 177103324296.4
hypothetical proteinB5F97_06950Not Available+1771058 - 177150116580.8
hypothetical proteinB5F97_06955Not Available+1771557 - 177189513256.0
hypothetical proteinB5F97_06960Not Available+1771892 - 17720747387.16
hypothetical proteinB5F97_06965Not Available+1772092 - 17723108649.23
hypothetical proteinB5F97_06970Not Available+1772503 - 177284113510.4

Displaying genes 1 – 10 of 3510 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

84 records
Metabolite IDMetabolite nameStructureCAS number
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0017395CDP-DG(16:0/18:1(9Z))C46H83N3O15P2Chemical structure of CDP-DG(16:0/18:1(9Z))NULL
Average980.124Da
Monoisotopic979.529942981Da

Displaying 1–10 of 84 metabolites