Escherichia coli S88

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli S88 is a gram-negative, rod-shaped bacterium that thrives in mesophilic conditions, exhibiting a temperature preference typically between 20°C and 45°C. Classified as a chemoheterotroph, E. coli S88 obtains its nutrients from organic compounds, allowing it to grow efficiently in various environments, including the gastrointestinal tracts of warm-blooded animals. As a facultative anaerobe, this microbe can survive both in the presence and absence of oxygen, utilizing aerobic respiration when oxygen is available, and switching to fermentation or anaerobic respiration when it is not. The E. coli S88 strain is predominantly found in the intestines of humans and other mammals, where it plays a crucial role in digestion and maintaining gut health. This strain, like other E. coli varieties, can also inhabit diverse environments beyond the intestine, including soil, water, and animal waste, which contributes to its important role in the ecosystem as a decomposer of organic material. E. coli S88 is often studied for its potential applications in biotechnology and microbial ecology due to its rapid growth rate and genetic manipulability. It is widely used as a model organism in molecular biology, especially in studies involving gene cloning, protein expression, and metabolic pathways, owing to its well-characterized genome. Furthermore, certain pathogenic strains of E. coli are known to cause foodborne illnesses, but E. coli S88 itself is typically non-pathogenic and serves as an essential component of the microbiome. Its versatility and adaptability render it a key player in both environmental and medical microbiology research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainS88

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli S88
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Escherichia coli S88


Gene Summary

Adenine Count

34503 bp

Thymine Count

33370 bp

Guanine Count

34203 bp

Cytosine Count

31777 bp

Genome Length

133853 bp

Protein-coding Genes

139 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
tyrosine-type recombinase/integraseECS88_RS00005P56979+132 - 87228192.5
repb family plasmid replication initiator proteinECS88_RS00010P0A254-1157 - 213437317.0
integrase core domain-containing proteinECS88_RS00020P15025+2880 - 320312961.1
integrase core domain-containing proteinECS88_RS27595P15026+3205 - 33093832.48
integrase core domain-containing proteinECS88_RS00030P18642+3370 - 388317986.5
is1-like element is1a family transposaseECS88_RS00035Not Available-4063 - 476026483.3
ferric aerobactin receptor iutaECS88_RS00050Q6U607-5285 - 748680828.3
integrase core domain-containing proteinECS88_RS00055P11295-7512 - 884550857.9
nis family aerobactin synthetase iuccECS88_RS00060Q47318-8842 - 1058466731.5
n(6)-hydroxylysine o-acetyltransferase iucbECS88_RS00065Q47317-10584 - 1153137148.1

Displaying genes 1 – 10 of 5132 in total

Metabolites

346 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 346 metabolites