Zymomonas mobilis subsp. pomaceae ATCC 29192

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Zymomonadaceae

Genus

Zymomonas

Description

Zymomonas mobilis subsp. mobilis (strain NCIB 11163) is a facultative aerobic, ethanol-producing bacterium. The natural habitat of this organism includes sugar-rich plant saps where the bacterium ferments sugar such as glucose or sucrose into ethanol and carbon dioxide. It is useful in industrial production systems, particularly in production of bioethanol for fuel. Genetically engineered strains that ferment pentoses in addition to naturally utilized hexoses also hold great promise for use in lignocellulosic biomass degradations. Z. mobilis is utilized for the conversion of sugars, particularly xylose, which is not utilized by another common sugar-fermenting organism such as yeast, to ethanol. Since xylose is a common breakdown product of cellulose or a waste component of the agricultural industry, it is an attractive source for ethanol production. Z. mobilis was chosen for this process as it is ethanol-tolerant (up to 120 grams of ethanol per litre) and productive (5-10% more ethanol than Saccharomyces). This bacterium ferments using the Enter-Doudoroff pathway, with the result that less carbon is used in cellular biomass production and more ends up as ethanol, another factor that favors this organism for ethanol production. Besides ethanol, Z. mobilis can produce other high-value chemicals such as sorbitol, levan, or phenylacetylcarbinol and has attracted interest for its unusual membrane steroid content. Lastly, Z. mobilis is regarded as a safe organism and is even used for medicinal purposes, which further facilitates its employment in large-scale biotechnological endeavors. (Adaptated from PMID: 19767433). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyZymomonadaceae
GenusZymomonas
SpeciesZymomonas mobilis
StrainATCC 29192

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Zymomonas mobilis subsp. pomaceae ATCC 29192
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Zymomonas mobilis subsp. pomaceae ATCC 29192


Gene Summary

Adenine Count

560971 bp

Thymine Count

551473 bp

Guanine Count

433422 bp

Cytosine Count

443999 bp

Genome Length

1989865 bp

Protein-coding Genes

1694 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
30s ribosomal protein s20ZYMOP_RS00005Q9Z5V0+210 - 4739673.74
chromosomal replication initiator protein dnaaZYMOP_RS00010Q9S493+1218 - 266954902.3
abc-f family atp-binding cassette domain-containing proteinZYMOP_RS00015A0A0H2VBH0+2764 - 463268703.1
ompa family proteinZYMOP_RS00020P84838+5041 - 613238259.1
heme-degrading domain-containing proteinZYMOP_RS00025Q9XBS9+6354 - 686618729.5
bax inhibitor-1/ycca family proteinZYMOP_RS00030Q9ZE15+7204 - 793226198.1
dienelactone hydrolase family proteinZYMOP_RS00035Q7DFU6-8003 - 887531706.8
molybdopterin-binding proteinZYMOP_RS00040Q03219-9021 - 978227572.3
type i methionyl aminopeptidaseZYMOP_RS00045Q9ZCD3+9895 - 1072529984.2
low specificity l-threonine aldolaseZYMOP_RS00050Q9HTF1+10793 - 1180636735.6

Displaying genes 1 – 10 of 1830 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1709 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00008135-dehydro-D-fructoseC6H10O6Chemical structure of 5-dehydro-D-fructoseNot available
Average178.14Da
Monoisotopic178.047738042Da

Displaying 1–10 of 1709 metabolites