Zymomonas mobilis subsp. pomaceae ATCC 29192

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Zymomonadaceae

Genus

Zymomonas

Description

Zymomonas mobilis subsp. mobilis (strain NCIB 11163) is a facultative aerobic, ethanol-producing bacterium. The natural habitat of this organism includes sugar-rich plant saps where the bacterium ferments sugar such as glucose or sucrose into ethanol and carbon dioxide. It is useful in industrial production systems, particularly in production of bioethanol for fuel. Genetically engineered strains that ferment pentoses in addition to naturally utilized hexoses also hold great promise for use in lignocellulosic biomass degradations. Z. mobilis is utilized for the conversion of sugars, particularly xylose, which is not utilized by another common sugar-fermenting organism such as yeast, to ethanol. Since xylose is a common breakdown product of cellulose or a waste component of the agricultural industry, it is an attractive source for ethanol production. Z. mobilis was chosen for this process as it is ethanol-tolerant (up to 120 grams of ethanol per litre) and productive (5-10% more ethanol than Saccharomyces). This bacterium ferments using the Enter-Doudoroff pathway, with the result that less carbon is used in cellular biomass production and more ends up as ethanol, another factor that favors this organism for ethanol production. Besides ethanol, Z. mobilis can produce other high-value chemicals such as sorbitol, levan, or phenylacetylcarbinol and has attracted interest for its unusual membrane steroid content. Lastly, Z. mobilis is regarded as a safe organism and is even used for medicinal purposes, which further facilitates its employment in large-scale biotechnological endeavors. (Adaptated from PMID: 19767433). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyZymomonadaceae
GenusZymomonas
SpeciesZymomonas mobilis
StrainATCC 29192

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Zymomonas mobilis subsp. pomaceae ATCC 29192
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Zymomonas mobilis subsp. pomaceae ATCC 29192


Gene Summary

Adenine Count

11159 bp

Thymine Count

10914 bp

Guanine Count

7376 bp

Cytosine Count

7938 bp

Genome Length

37387 bp

Protein-coding Genes

39 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
30s ribosomal protein s20ZYMOP_RS00005Q9Z5V0+210 - 4739673.74
chromosomal replication initiator protein dnaaZYMOP_RS00010Q9S493+1218 - 266954902.3
abc-f family atp-binding cassette domain-containing proteinZYMOP_RS00015A0A0H2VBH0+2764 - 463268703.1
ompa family proteinZYMOP_RS00020P84838+5041 - 613238259.1
heme-degrading domain-containing proteinZYMOP_RS00025Q9XBS9+6354 - 686618729.5
bax inhibitor-1/ycca family proteinZYMOP_RS00030Q9ZE15+7204 - 793226198.1
dienelactone hydrolase family proteinZYMOP_RS00035Q7DFU6-8003 - 887531706.8
molybdopterin-binding proteinZYMOP_RS00040Q03219-9021 - 978227572.3
type i methionyl aminopeptidaseZYMOP_RS00045Q9ZCD3+9895 - 1072529984.2
low specificity l-threonine aldolaseZYMOP_RS00050Q9HTF1+10793 - 1180636735.6

Displaying genes 1 – 10 of 1830 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1607 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da

Displaying 1–10 of 1607 metabolites