Methanocaldococcus vulcanius M7

Gram-negativeCocciNon-motileAnaerobic

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanococci

Order

Methanococcales

Family

Methanocaldococcaceae

Genus

Methanocaldococcus

Description

Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) is an anaerobic, autotrophic, hyperthermophilic methanogen archaeon isolated from a deep-sea hydrothermal chimney sample collected on the East Pacific Rise at a depth of 2600 m. The temperature range for growth at pH 6.5 is 49-89 degrees Celsius, with optimum growth at 80 degrees Celsius. The optimum pH for growth is 6.5, and the optimum NaCl concentration for growth is around 25 g/l. It uses H2 and CO2 as the only substrates for growth and methane production. Tungsten, selenium and yeast extract stimulate growth significantly. In the presence of CO2 and H2, the organism reduces elemental sulphur to hydrogen sulphide. Growth is inhibited by chloramphenicol and rifampicin, but not by ampicillin, kanamycin, penicillin and streptomycin. As determined by 16S rDNA gene sequence analysis, this organism is closely related to Methanococcus jannaschii (strain JAL-1T). However, despite the high percentage of similarity between their 16S rDNA sequences (97.1%), the DNA-DNA hybridization levels between these strains are less than 5%. On the basis of these observations and physiological traits, it is proposed that this organism should be placed in a new species, Methanococcus vulcanius. (Adaptated from PMID: 10319479). (HAMAP: METVM)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanococci
OrderMethanococcales
FamilyMethanocaldococcaceae
GenusMethanocaldococcus
SpeciesMethanocaldococcus vulcanius
StrainM7

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Methanocaldococcus vulcanius M7
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature80
Temperature rangeHyperthermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceAutotroph
PathogenicityNo

Genome Summary

Methanocaldococcus vulcanius M7


Gene Summary

Adenine Count

1521 bp

Thymine Count

1768 bp

Guanine Count

556 bp

Cytosine Count

859 bp

Genome Length

4704 bp

Protein-coding Genes

2 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinMETVU_RS08790Not Available+487 - 94217037.5
minichromosome maintenance protein mcmMETVU_RS08795Not Available-1651 - 4497109104.0
hypothetical proteinMETVU_RS08735Not Available+877 - 11199255.22
type ii toxin-antitoxin system rele family toxinMETVU_RS08740Not Available-1120 - 140411301.9
hypothetical proteinMETVU_RS08745Not Available+1769 - 209512414.5
hypothetical proteinMETVU_RS08750Not Available+2110 - 254717286.6
hypothetical proteinMETVU_RS08755Not Available+2540 - 291114435.5
simpl domain-containing proteinMETVU_RS08760Not Available+3238 - 400529494.1
hypothetical proteinMETVU_RS08765Not Available+5174 - 554214304.6
hypothetical proteinMETVU_RS08770Not Available+5646 - 766176898.2

Displaying genes 1 – 10 of 1784 in total

Metabolites

165 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003462(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinateC13H19N4O12PChemical structure of (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate3031-95-6
Average454.2833Da
Monoisotopic454.0737086Da
BASm0003763(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateC11H12NO6PChemical structure of (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateNot available
Average285.1898Da
Monoisotopic285.0402236Da
BASm0003889(S)-2-ureidoglycineC3H7N3O3Chemical structure of (S)-2-ureidoglycineNot available
Average133.106Da
Monoisotopic133.048741105Da
BASm0003987cob(I)alaminC62H88CoN13O14PChemical structure of cob(I)alamin18534-66-2
Average1329.3478Da
Monoisotopic1328.564331Da
BASm0004122ADP-L-glycero-beta-D-manno-heptoseC17H25N5O16P2Chemical structure of ADP-L-glycero-beta-D-manno-heptoseNot available
Average617.355Da
Monoisotopic617.078250901Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0006202(2S)-2-acetamido-4-aminobutanoateC6H12N2O3Chemical structure of (2S)-2-acetamido-4-aminobutanoateNot available
Average160.173Da
Monoisotopic160.084792254Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da

Displaying 1–10 of 165 metabolites