Methanocaldococcus sp. FS406-22

CocciNon-motileAnaerobic

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanococci

Order

Methanococcales

Family

Methanocaldococcaceae

Genus

Methanocaldococcus

Description

Methanocaldococcus sp. (strain FS406-22) is an anaerobic, piezophilic, diazotrophic, hyperthermophilic marine archaeon isolated from deep-sea hydrothermal vent fluid. It is able to reduce N2 to NH3 at up to 92 degrees Celsius, which is 28 degrees higher than the current upper temperature limit of biological nitrogen fixation. Methanocaldococcus sp. grows at temperature between 58 to 92 degrees Celsius with N2 as the sole source of nitrogen. Maximal growth occurred at 90 degrees Celsius, and no growth is detected at 55 and 95 degrees Celsius. It is also able to produce methane. The 16S ribosomal RNA genes of Methanocaldococcus sp. is 99% similar to that of non-nitrogen fixing Methanocaldococcus jannaschii DSM 2661. At its optimal growth temperature of 90 degrees Celsius, Methanocaldococcus sp. expresses nifHDK genes which encode the nitrogenase enzyme complex. This increase in the temperature limit of nitrogen fixation could reveal a broader range of conditions for life in the subseafloor biosphere and other nitrogen limited ecosystems than previously estimated. (Adapted from: 17170307). (HAMAP: METSF)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanococci
OrderMethanococcales
FamilyMethanocaldococcaceae
GenusMethanocaldococcus
SpeciesMethanocaldococcus sp. FS406-22
StrainFS406-22

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature90
Temperature rangeHyperthermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceLithotroph
PathogenicityNo

Genome Summary

Methanocaldococcus sp. FS406-22


Gene Summary

Adenine Count

598509 bp

Thymine Count

598193 bp

Guanine Count

283957 bp

Cytosine Count

280280 bp

Genome Length

1760939 bp

Protein-coding Genes

1836 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
atp synthase subunit kMFS40622_RS00005Q57674+49 - 71121361.8
v-type proton atpase subunit eMFS40622_RS00010Q57673+775 - 138622809.9
v-type atp synthase subunit cMFS40622_RS00015Q57672+1403 - 260244853.2
v-type atp synthase subunit fMFS40622_RS00020Q57671+2612 - 290810941.4
atp synthase subunit aMFS40622_RS00025Q57670+2942 - 470565543.4
atp synthase subunit bMFS40622_RS00030Q57669+4752 - 614951363.8
dual specificity protein phosphatase family proteinMFS40622_RS00035Q57668+6271 - 673517716.4
hydrogenase maturation nickel metallochaperone hypaMFS40622_RS00040Q57667-6738 - 711514175.2
metal-sulfur cluster assembly factorMFS40622_RS00045Q58529-7197 - 747510166.5
bifunctional n(6)-l-threonylcarbamoyladenine synthase/serine/threonine protein kinaseMFS40622_RS00050Q58530-7566 - 917360636.5

Displaying genes 1 – 10 of 1894 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

133 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001772maleateC4H2O4Chemical structure of maleateNot available
Average114.057Da
Monoisotopic113.996405704Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 133 metabolites