Planctopirus limnophila DSM 3776

Gram-negativeCocciMotileAerobe

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Planctomycetales

Family

Planctomycetaceae

Genus

Planctopirus

Description

Planctopirus limnophila DSM 3776 is a Gram-negative, nonsporulating coccus that thrives in aquatic environments and exhibits aerobic metabolism. This microbe's spherical shape is characteristic of many cocci, contributing to its identification within its ecological niche. As an aerobe, Planctopirus limnophila requires oxygen for survival and growth, indicating its adaptation to oxygen-rich habitats typically found in freshwater systems. The presence of this organism in aquatic ecosystems suggests it may play a role in biogeochemical cycles, potentially influencing nutrient availability and microbial community dynamics. Given its specific habitat and metabolic requirements, Planctopirus limnophila may interact closely with other microorganisms in its environment, possibly contributing to processes such as organic matter decomposition or nutrient cycling. Understanding the ecological roles of microbes like Planctopirus limnophila is crucial for comprehending the complexities of aquatic ecosystems and their responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusPlanctopirus
SpeciesPlanctopirus limnophila
StrainDSM 3776

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Planctopirus limnophila DSM 3776
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planctopirus limnophila DSM 3776


Gene Summary

Adenine Count

1262262 bp

Thymine Count

1250703 bp

Guanine Count

1443442 bp

Cytosine Count

1466668 bp

Genome Length

5423075 bp

Protein-coding Genes

4001 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hypothetical proteinPLIM_RS23800Not Available+2648 - 295011244.4
Terminase small subunitPLIM_RS25120Not Available+3169 - 356414071.5
Terminase large subunitPLIM_RS21815P59217+3521 - 518262937.7
Portal proteinPLIM_RS23470Q9ZXB2+5179 - 681360421.6
Putative clp proteasePLIM_RS21830Q4FM94+6743 - 742925202.0
CapsidPLIM_RS23475Not Available+7597 - 891048039.3
hypothetical proteinPLIM_RS21840Not Available+9043 - 934810658.3
Dna packaging/head-tail-connectorPLIM_RS21845Not Available+9395 - 998222146.2
phage head closure proteinPLIM_RS21850Not Available+9982 - 1031712498.8
hypothetical proteinPLIM_RS21855Not Available+10314 - 1094922825.0

Displaying genes 1 – 10 of 4126 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

565 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 565 metabolites