Tsukamurella paurometabola DSM 20162

Gram-positiveRodNon-motileObligate aerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Tsukamurellaceae

Genus

Tsukamurella

Description

Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) is an aerobic, weakly acid-fast, pleomorphic, Gram-positive bacterium isolated from mycetomes and ovaries of bed bugs (Cimex lectularius) and also found in soil and sludge. It is a member of the nocardioform actinomycetes and is closely related to the genus Mycobacterium. This organism has been isolated from cases of systemic infection, usually in association with other diseases. Cases of human infection with T. paurometabola are infrequent, nevertheless diagnosis rates are increasing, typically in patients with underlying predisposing factors including immunosupression, chronic pathology and indwelling foreign bodies. Thus it is a novel pathogen causing catheter-related bacteremia in patients with cancer. (Adapted from: http://www.ncbi.nlm.nih.gov/sites/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=29399 and PMID: 1571430). (EBI Integr8)

Taxonomy

Kingdom	Bacillati
Phylum	Actinomycetota
Class	Actinomycetes
Order	Mycobacteriales
Family	Tsukamurellaceae
Genus	Tsukamurella
Species	Tsukamurella paurometabola
Strain	DSM 20162

Profile

Physiology
Gram staining properties	Positive
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	1

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Obligate aerobic
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	Terrestrial
Biotic relationship	Free living
Host(s)	Homo sapiens
Cell arrangement	Pairs
Sporulation	Nonsporulating
Energy source	Chemoorganotroph
Pathogenicity	Yes

Genome Summary

Tsukamurella paurometabola DSM 20162

NC_014158.1 NC_014159.1

Gene Summary

Adenine Count

16453 bp

Thymine Count

15702 bp

Guanine Count

33576 bp

Cytosine Count

34075 bp

Genome Length

99806 bp

Protein-coding Genes

91 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
Attl	Not Available	Not Available	+	3999397 - 3999411	Not Available
Gp85	TPAU_RS19450	Not Available	+	4010419 - 4011690	45550.2
hypothetical protein	TPAU_RS19455	Not Available	+	4011792 - 4012064	10220.2
Putative endonuclease	TPAU_RS23750	Not Available	+	4012057 - 4012566	18561.1
Gp33	TPAU_RS19465	Not Available	+	4012563 - 4014032	53757.9
Portal protein	TPAU_RS19470	Not Available	+	4014043 - 4015317	45842.1
hypothetical protein	TPAU_RS19475	Not Available	+	4015314 - 4015904	21143.9
hypothetical protein	TPAU_RS19480	Not Available	+	4015894 - 4016277	13865.8
hypothetical protein	TPAU_RS19485	Not Available	+	4016292 - 4016573	10226.1
Capsid protein	TPAU_RS19490	Not Available	+	4016784 - 4017623	29166.9

Displaying genes 1 – 10 of 4368 in total

Pathways

808 pathways

2,3-Dihydroxybenzoate Biosynthesis pathway thumbnail

2,3-Dihydroxybenzoate Biosynthesis

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides pathway thumbnail

Biosynthesis of Siderophore Group Nonribosomal Peptides

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lysine Biosynthesis pathway thumbnail

Lysine Biosynthesis

Lysine Biosynthesis

Taurine Metabolism pathway thumbnail

Taurine Metabolism

Taurine Metabolism

Glycolysis and Pyruvate Dehydrogenase pathway thumbnail

Glycolysis and Pyruvate Dehydrogenase

Glycolysis and Pyruvate Dehydrogenase

Arginine Metabolism pathway thumbnail

Arginine Metabolism

Arginine Metabolism

Ornithine Metabolism pathway thumbnail

Ornithine Metabolism

Ornithine Metabolism

Proline Metabolism pathway thumbnail

Proline Metabolism

Proline Metabolism

Show All 808 Pathways

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000250	2,5-didehydro-D-gluconateC6H7O7		`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000253	2-oxopent-4-enoateC5H5O3		Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000428	3-oxoadipateC6H6O5		Not available	Average158.11Da Monoisotopic158.022620453Da
BASm0000516	6-deoxyerythronolide BC21H38O6		Not available	Average386.5228Da Monoisotopic386.2668389Da
BASm0000553	biphenyl-2,3-diolC12H10O2		Not available	Average186.2066Da Monoisotopic186.0680796Da
BASm0000592	(S)-1-phenylethanolC8H10O		Not available	Average122.1644Da Monoisotopic122.0731649Da
BASm0000893	crotonobetaineC7H13NO2		`927-89-9`	Average143.1836Da Monoisotopic143.0946287Da
BASm0000989	GlycerolC3H8O3		`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001003	phthalateC8H4O4		Not available	Average164.117Da Monoisotopic164.0120558Da

Displaying 1–10 of 892 metabolites