Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hlyd family secretion protein | SAMN04488101_10232 | Not Available | - | 1050376 - 1051740 | 48745.3 |
| outer membrane protein | SAMN04488101_10233 | Not Available | - | 1051773 - 1053131 | 49593.2 |
| peptidoglycan/xylan/chitin deacetylase, pgda/cda1 family | SAMN04488101_10234 | Not Available | + | 1053174 - 1053791 | 23820.7 |
| aconitase | SAMN04488101_10235 | Not Available | + | 1053927 - 1056203 | 81795.2 |
| putative signal transducing protein | SAMN04488101_10236 | Not Available | - | 1056280 - 1056693 | 15499.7 |
| beta-glucosidase | SAMN04488101_10237 | Not Available | - | 1056729 - 1058066 | 50808.7 |
| muts domain iii | SAMN04488101_10238 | Not Available | - | 1058102 - 1059919 | 68515.9 |
| 23s rrna (pseudouridine1915-n3)-methyltransferase | SAMN04488101_10239 | Not Available | + | 1060026 - 1060499 | 18102.1 |
| hypothetical protein | SAMN04488101_10240 | Not Available | + | 1060561 - 1060686 | 4941.21 |
| hypothetical protein | SAMN04488101_10241 | Not Available | - | 1060748 - 1061287 | 19348.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.