Pedobacter sp. V48

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. V48 is a Gram-negative bacterium primarily found in sandy environments, specifically within sand microcosms. This microbe is part of the genus Pedobacter, which is typically characterized by its distinctive morphological and biochemical properties. Gram-negative bacteria are known for their complex cell wall structure, which contributes to their resilience in diverse habitats. The habitat of Pedobacter sp. V48 suggests a potential role in the biogeochemical processes within sandy ecosystems, where microorganisms can significantly influence nutrient cycling and organic matter decomposition. The presence of this bacterium in sand microcosms indicates its adaptability to microhabitats that may experience fluctuations in moisture and nutrient availability. Understanding the functional capabilities of Pedobacter sp. V48 within its habitat could shed light on its ecological roles, such as its involvement in the degradation of organic materials or interactions with other microbial species. The study of this bacterium may provide insights into the microbial community dynamics in sandy soils and their contributions to ecosystem health and stability. As such, Pedobacter sp. V48 serves as an intriguing subject for further research into the ecological significance of microorganisms in terrestrial environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. V48
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsand; sand microcosms
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. V48

Accession NumberAWRU00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5839 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Dna packaging proteinN824_29760Not Available+4550019 - 45501424441.47
Capsid proteinN824_29765Not Available+4550179 - 455146248485.4
Major spike proteinN824_29770Not Available+4551573 - 455210018621.2
Minor spike proteinN824_29775Not Available+4552109 - 455309534449.3
Dna replication initiation protein gpaN824_29780Not Available+4553132 - 455470059683.0
CN824_29785Not Available+4554697 - 455495710081.0
External scaffolding proteinN824_29790Not Available+4554954 - 455541216938.3
Dna packaging proteinN824_29795Not Available+4555412 - 45555284227.24
Capsid proteinN824_29800Not Available+4555565 - 455684848384.3
Major spike proteinN824_29805Not Available+4556959 - 455748619048.7

Displaying genes 1 – 10 of 5895 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites