Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | SAMN04488101_10212 | Not Available | + | 1020081 - 1021325 | 46033.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_10213 | Not Available | + | 1021481 - 1025059 | 133094.0 |
| susd family protein | SAMN04488101_10214 | Not Available | + | 1025071 - 1026612 | 57274.8 |
| pregnancy-associated plasma protein-a | SAMN04488101_10215 | Not Available | + | 1026637 - 1027908 | 46800.5 |
| peroxiredoxin | SAMN04488101_10216 | Not Available | + | 1027920 - 1029068 | 42358.4 |
| thioredoxin-like | SAMN04488101_10217 | Not Available | + | 1029090 - 1030295 | 44698.5 |
| ahpc/tsa family protein | SAMN04488101_10218 | Not Available | + | 1030326 - 1031183 | 33294.8 |
| hypothetical protein | SAMN04488101_10219 | Not Available | + | 1031386 - 1031922 | 19704.9 |
| l,d-transpeptidase catalytic domain | SAMN04488101_10220 | Not Available | - | 1031928 - 1033382 | 54695.4 |
| histidine kinase | SAMN04488101_10221 | Not Available | + | 1033533 - 1035107 | 59933.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.