Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| amino acid abc transporter substrate-binding protein, paat family | SAMN04488101_1022 | Not Available | - | 1006650 - 1007336 | 25803.1 |
| numod1 domain-containing protein | SAMN04488101_1023 | Not Available | + | 1007770 - 1008999 | 46059.7 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_1024 | Not Available | + | 1009145 - 1009789 | 25035.5 |
| fecr family protein | SAMN04488101_1025 | Not Available | + | 1009874 - 1011070 | 44354.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_1026 | Not Available | + | 1011257 - 1014649 | 124990.0 |
| susd family protein | SAMN04488101_1027 | Not Available | + | 1014661 - 1016178 | 56657.1 |
| thioredoxin-like | SAMN04488101_1028 | Not Available | + | 1016265 - 1017464 | 44349.1 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_1029 | Not Available | + | 1017499 - 1018659 | 44224.4 |
| hypothetical protein | SAMN04488101_10210 | Not Available | + | 1018720 - 1019256 | 19615.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_10211 | Not Available | + | 1019429 - 1020019 | 22868.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.