Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Trna-met | Not Available | Not Available | + | 982332 - 982408 | Not Available |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_101852 | Not Available | + | 982590 - 983153 | 22103.7 |
| fecr family protein | SAMN04488101_101853 | Not Available | + | 983226 - 984143 | 34659.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101854 | Not Available | + | 984254 - 987775 | 129847.0 |
| starch-binding associating with outer membrane | SAMN04488101_101855 | Not Available | + | 987788 - 989584 | 67234.7 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN04488101_101856 | Not Available | + | 989578 - 990465 | 33661.0 |
| response regulator receiver domain-containing protein | SAMN04488101_101857 | Not Available | - | 990528 - 990932 | 15311.9 |
| response regulator receiver domain-containing protein | SAMN04488101_101858 | Not Available | - | 990922 - 992001 | 40821.8 |
| hypothetical protein | SAMN04488101_101859 | Not Available | - | 992013 - 994175 | 81083.4 |
| hypothetical protein | SAMN04488101_101860 | Not Available | - | 994172 - 994891 | 26669.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.