Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| s-formylglutathione hydrolase frmb | SAMN04488101_101841 | Not Available | - | 973517 - 974338 | 31184.0 |
| cyclic nucleotide-binding protein | SAMN04488101_101842 | Not Available | - | 974408 - 975070 | 26344.1 |
| nadph:quinone reductase | SAMN04488101_101843 | Not Available | - | 975256 - 976257 | 36748.2 |
| uncharacterized oxidoreductase | SAMN04488101_101844 | Not Available | - | 976285 - 977052 | 27841.1 |
| uncharacterized oxidoreductase | SAMN04488101_101845 | Not Available | - | 977049 - 977771 | 25705.4 |
| transcriptional regulator, hxlr family | SAMN04488101_101846 | Not Available | + | 977870 - 978277 | 15654.3 |
| cubico group peptidase, beta-lactamase class c family | SAMN04488101_101847 | Not Available | - | 978435 - 979550 | 41906.3 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN04488101_101848 | Not Available | - | 980116 - 980751 | 23360.6 |
| hypothetical protein | SAMN04488101_101849 | Not Available | - | 980959 - 981207 | 9260.15 |
| hypothetical protein | SAMN04488101_101850 | Not Available | + | 981364 - 982011 | 24934.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.