Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase | SAMN04488101_101521 | Not Available | + | 614290 - 615093 | 29174.9 |
| putative redox protein | SAMN04488101_101522 | Not Available | + | 615161 - 615577 | 15403.8 |
| o-succinylhomoserine sulfhydrylase | SAMN04488101_101523 | Not Available | + | 615583 - 616749 | 42953.2 |
| hypothetical protein | SAMN04488101_101524 | Not Available | - | 616839 - 617114 | 10501.8 |
| hypothetical protein | SAMN04488101_101525 | Not Available | - | 617118 - 619928 | 106878.0 |
| eama-like transporter family protein | SAMN04488101_101526 | Not Available | - | 620510 - 621400 | 33299.8 |
| lipopolysaccharide export system permease protein | SAMN04488101_101527 | Not Available | - | 621400 - 622503 | 41822.4 |
| pp_00523 | SAMN04488101_101528 | Not Available | - | 622504 - 623634 | Not Available |
| glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-n-acetylglucosamine synthase | SAMN04488101_101529 | Not Available | + | 623810 - 624955 | 43435.9 |
| 16s rrna m(7)g-527 methyltransferase | SAMN04488101_101530 | Not Available | + | 624952 - 625578 | 23800.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.