Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pectate lyase, pela/pel-15e family | SAMN04488101_1244 | Not Available | - | 5908740 - 5909795 | 39616.5 |
| glycosyl hydrolases family 28 | SAMN04488101_1245 | Not Available | - | 5909807 - 5911465 | 60385.7 |
| pectinesterase | SAMN04488101_1246 | Not Available | - | 5911477 - 5912430 | 35206.5 |
| transcriptional regulator, laci family | SAMN04488101_1247 | Not Available | + | 5912577 - 5913590 | 37829.4 |
| pectinesterase | SAMN04488101_1248 | Not Available | - | 5913764 - 5914762 | 37015.5 |
| iron complex outermembrane recepter protein | SAMN04488101_1249 | Not Available | + | 5915229 - 5917643 | 87888.9 |
| beta-barrel assembly machine subunit bamd | SAMN04488101_12410 | Not Available | + | 5917854 - 5918783 | 35526.3 |
| rna polymerase rpb6 | SAMN04488101_12411 | Not Available | + | 5918783 - 5919109 | 12592.8 |
| phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase | SAMN04488101_12412 | Not Available | + | 5919155 - 5920354 | 42998.1 |
| protein of unknown function | SAMN04488101_12413 | Not Available | + | 5920351 - 5921256 | 34665.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.