Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, fadr family | SAMN04488101_1237 | Not Available | - | 5856033 - 5856689 | 24488.5 |
| nagd protein | SAMN04488101_1238 | Not Available | + | 5856878 - 5857651 | 28208.2 |
| signal transduction histidine kinase | SAMN04488101_1239 | Not Available | + | 5857976 - 5859967 | 75198.6 |
| hypothetical protein | SAMN04488101_12310 | Not Available | + | 5859988 - 5860701 | 27485.7 |
| imp dehydrogenase | SAMN04488101_12311 | Not Available | - | 5860761 - 5862230 | 52325.5 |
| outer membrane protein assembly factor bamb, contains pqq-like beta-propeller repeat | SAMN04488101_12312 | Not Available | + | 5862513 - 5864348 | 67972.6 |
| predicted zn-dependent peptidase | SAMN04488101_12313 | Not Available | - | 5864393 - 5865667 | 47460.5 |
| predicted zn-dependent peptidase | SAMN04488101_12314 | Not Available | - | 5865660 - 5866916 | 47438.4 |
| de-hypoxanthine futalosine cyclase | SAMN04488101_12315 | Not Available | + | 5867035 - 5868159 | 42048.4 |
| two component transcriptional regulator, lyttr family | SAMN04488101_12316 | Not Available | + | 5868209 - 5868988 | 29340.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.