Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| flavodoxin | SAMN04488101_12132 | Not Available | + | 5769051 - 5769674 | 23529.9 |
| uncharacterized conserved protein yurz, alkylhydroperoxidase/carboxymuconolactone decarboxylase family | SAMN04488101_12133 | Not Available | + | 5769759 - 5770481 | 26031.9 |
| hypothetical protein | SAMN04488101_12134 | Not Available | + | 5770525 - 5771553 | 37432.1 |
| cupin domain protein | SAMN04488101_12135 | Not Available | + | 5771565 - 5772062 | 18185.6 |
| transcriptional regulator, asnc family | SAMN04488101_12136 | Not Available | + | 5772366 - 5772833 | 17790.4 |
| arac-type dna-binding protein | SAMN04488101_12137 | Not Available | - | 5772825 - 5773721 | 33895.1 |
| d-amino-acid dehydrogenase | SAMN04488101_12138 | Not Available | - | 5773784 - 5775025 | 45156.3 |
| proline racemase | SAMN04488101_12139 | Not Available | - | 5775042 - 5776043 | 36702.1 |
| nadp-dependent aldehyde dehydrogenase | SAMN04488101_12140 | Not Available | - | 5776043 - 5777590 | 55079.2 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN04488101_12141 | Not Available | - | 5777587 - 5778522 | 34547.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.