Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11942 | Not Available | + | 5606434 - 5609787 | 124278.0 |
| starch-binding associating with outer membrane | SAMN04488101_11943 | Not Available | + | 5609807 - 5611429 | 60912.3 |
| ipt/tig domain-containing protein | SAMN04488101_11944 | Not Available | + | 5611429 - 5612793 | 47924.2 |
| dna-binding beta-propeller fold protein ynce | SAMN04488101_11945 | Not Available | + | 5612818 - 5615115 | 82303.9 |
| hypothetical protein | SAMN04488101_11946 | Not Available | + | 5615176 - 5616441 | 47214.6 |
| hexosaminidase | SAMN04488101_11947 | Not Available | + | 5616475 - 5618331 | 70556.4 |
| quinoprotein glucose dehydrogenase | SAMN04488101_11948 | Not Available | + | 5618361 - 5620466 | 76543.3 |
| sugar phosphate isomerase/epimerase | SAMN04488101_11949 | Not Available | + | 5620500 - 5621399 | 33821.6 |
| alpha-l-rhamnosidase n-terminal domain-containing protein | SAMN04488101_11950 | Not Available | + | 5621473 - 5624253 | 103887.0 |
| alpha-l-rhamnosidase | SAMN04488101_11951 | Not Available | + | 5624253 - 5627090 | 106819.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.