Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN04488101_11851 | Not Available | + | 5486954 - 5488174 | 44199.3 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN04488101_11852 | Not Available | + | 5488196 - 5489020 | 30357.7 |
| hypothetical protein | SAMN04488101_11853 | Not Available | - | 5489091 - 5489411 | 11967.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11854 | Not Available | + | 5489548 - 5490111 | 21691.3 |
| fecr family protein | SAMN04488101_11855 | Not Available | + | 5490166 - 5491338 | 44109.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11856 | Not Available | + | 5491375 - 5494953 | 131653.0 |
| susd family protein | SAMN04488101_11857 | Not Available | + | 5494964 - 5496469 | 55536.6 |
| hypothetical protein | SAMN04488101_11858 | Not Available | + | 5496481 - 5497383 | 33638.5 |
| peroxiredoxin | SAMN04488101_11859 | Not Available | + | 5497401 - 5498546 | 44375.9 |
| subtilase family protein | SAMN04488101_11860 | Not Available | + | 5498575 - 5500227 | 60428.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.