Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolase family 88 | SAMN04488101_117115 | Not Available | + | 5412259 - 5413365 | 41914.6 |
| hypothetical protein | SAMN04488101_117116 | Not Available | + | 5413421 - 5414647 | 46899.5 |
| rna polymerase sigma factor, sigma-70 family | SAMN04488101_117117 | Not Available | + | 5414793 - 5415341 | 21220.7 |
| hypothetical protein | SAMN04488101_117118 | Not Available | + | 5415322 - 5415591 | 10714.9 |
| atp-dependent clp protease proteolytic subunit clpp | SAMN04488101_117119 | Not Available | + | 5415682 - 5416353 | 24710.7 |
| glycosyl hydrolase family 92 | SAMN04488101_117120 | Not Available | - | 5416461 - 5417069 | 22390.7 |
| glycosyl hydrolase family 92 | SAMN04488101_117121 | Not Available | - | 5417210 - 5418217 | 37503.4 |
| signal transduction histidine kinase | SAMN04488101_117122 | Not Available | + | 5418374 - 5420443 | 79200.2 |
| protein n-acetyltransferase, rimj/riml family | SAMN04488101_117123 | Not Available | + | 5420775 - 5421341 | 21819.5 |
| hypothetical protein | SAMN04488101_117124 | Not Available | - | 5421352 - 5421573 | 8420.16 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.