Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_117105 | Not Available | - | 5397054 - 5397398 | 13418.8 |
| hypothetical protein | SAMN04488101_117106 | Not Available | - | 5397438 - 5398544 | 42457.4 |
| dna-binding transcriptional regulator, mocr family, contains an aminotransferase domain | SAMN04488101_117107 | Not Available | - | 5398595 - 5400010 | 53257.9 |
| hypothetical protein | SAMN04488101_117108 | Not Available | - | 5400108 - 5400485 | 14431.1 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488101_117109 | Not Available | + | 5400618 - 5401139 | 20492.6 |
| putative nadph-quinone reductase (modulator of drug activity b) | SAMN04488101_117110 | Not Available | + | 5401208 - 5401798 | 22535.9 |
| hypothetical protein | SAMN04488101_117111 | Not Available | + | 5401877 - 5402638 | 28304.1 |
| two component regulator propeller | SAMN04488101_117112 | Not Available | - | 5402653 - 5406714 | 154571.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_117113 | Not Available | + | 5407023 - 5410340 | 120401.0 |
| starch-binding associating with outer membrane | SAMN04488101_117114 | Not Available | + | 5410359 - 5412119 | 65109.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.