Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488101_11775 | Not Available | + | 5358729 - 5359541 | 29863.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11776 | Not Available | + | 5359584 - 5362760 | 116600.0 |
| starch-binding associating with outer membrane | SAMN04488101_11777 | Not Available | + | 5362765 - 5364606 | 67249.6 |
| protein of unknown function | SAMN04488101_11778 | Not Available | + | 5364633 - 5365529 | 32819.1 |
| glycosyl hydrolase family 26 | SAMN04488101_11779 | Not Available | + | 5365538 - 5367067 | 58249.7 |
| right handed beta helix region | SAMN04488101_11780 | Not Available | + | 5367097 - 5368302 | 42911.9 |
| tat (twin-arginine translocation) pathway signal sequence | SAMN04488101_11781 | Not Available | + | 5368498 - 5369514 | 36185.8 |
| predicted dehydrogenase | SAMN04488101_11782 | Not Available | + | 5369589 - 5370944 | 50228.5 |
| glucose/galactose transporter | SAMN04488101_11783 | Not Available | + | 5370954 - 5372288 | 48964.1 |
| oxidoreductase family, nad-binding rossmann fold | SAMN04488101_11784 | Not Available | + | 5372305 - 5373711 | 53454.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.