Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nucleoside-diphosphate-sugar epimerase | SAMN04488101_11765 | Not Available | + | 5348045 - 5349061 | 37368.0 |
| dihydrodipicolinate synthase/n-acetylneuraminate lyase | SAMN04488101_11766 | Not Available | + | 5349061 - 5350122 | 39296.2 |
| hypothetical protein | SAMN04488101_11767 | Not Available | + | 5350101 - 5351480 | 51821.1 |
| lysophospholipase l1 | SAMN04488101_11768 | Not Available | + | 5351492 - 5352262 | 28641.3 |
| copper binding protein, plastocyanin/azurin family | SAMN04488101_11769 | Not Available | + | 5352265 - 5353404 | 41943.9 |
| glucose/arabinose dehydrogenase, beta-propeller fold | SAMN04488101_11770 | Not Available | + | 5353401 - 5354894 | 55350.4 |
| cytochrome c | SAMN04488101_11771 | Not Available | + | 5355004 - 5355363 | 12566.5 |
| predicted dehydrogenase | SAMN04488101_11772 | Not Available | + | 5355587 - 5356810 | 45440.8 |
| protein of unknown function | SAMN04488101_11773 | Not Available | + | 5356821 - 5357396 | 21204.4 |
| cephalosporin-c deacetylase | SAMN04488101_11774 | Not Available | + | 5357404 - 5358717 | 48272.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.