Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_1175 | Not Available | + | 5275689 - 5279087 | 124611.0 |
| starch-binding associating with outer membrane | SAMN04488101_1176 | Not Available | + | 5279108 - 5280562 | 54367.9 |
| hypothetical protein | SAMN04488101_1177 | Not Available | + | 5280587 - 5281819 | 44768.7 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN04488101_1178 | Not Available | + | 5281884 - 5283239 | 50688.2 |
| acetyl-coa carboxylase, carboxyltransferase component | SAMN04488101_1179 | Not Available | + | 5283336 - 5284964 | 59183.5 |
| thioredoxin reductase (nadph) | SAMN04488101_11710 | Not Available | + | 5285066 - 5286028 | 34386.7 |
| hexosaminidase | SAMN04488101_11711 | Not Available | + | 5286154 - 5288055 | 70682.7 |
| hypothetical protein | SAMN04488101_11712 | Not Available | + | 5288079 - 5288705 | 22911.2 |
| transcriptional regulator, arac family | SAMN04488101_11713 | Not Available | + | 5288713 - 5289531 | 31477.0 |
| hypothetical protein | SAMN04488101_11714 | Not Available | - | 5289680 - 5290207 | 20533.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.