Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| n-carbamoylputrescine amidase | SAMN04488101_116114 | Not Available | - | 5263395 - 5264270 | 33049.1 |
| ribonucleoside-diphosphate reductase alpha chain | SAMN04488101_116115 | Not Available | - | 5264857 - 5267235 | 89240.5 |
| ribonucleoside-diphosphate reductase beta chain | SAMN04488101_116116 | Not Available | - | 5267340 - 5268314 | 37490.7 |
| rare lipoprotein a | SAMN04488101_116117 | Not Available | - | 5268696 - 5269160 | 16786.3 |
| peptide-methionine (r)-s-oxide reductase | SAMN04488101_116118 | Not Available | - | 5269240 - 5269719 | 18066.9 |
| succinyl-coa synthetase alpha subunit | SAMN04488101_116119 | Not Available | - | 5269883 - 5270764 | 30047.7 |
| thioredoxin-like domain-containing protein | SAMN04488101_1171 | Not Available | + | 5271492 - 5271863 | 13911.4 |
| 3-oxoacyl-[acyl-carrier-protein] synthase ii | SAMN04488101_1172 | Not Available | + | 5272205 - 5273455 | 43674.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_1173 | Not Available | + | 5273627 - 5274202 | 22528.0 |
| fecr family protein | SAMN04488101_1174 | Not Available | + | 5274290 - 5275486 | 44291.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.