Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488101_11694 | Not Available | - | 5239615 - 5241156 | 56931.6 |
| protein of unknown function | SAMN04488101_11695 | Not Available | - | 5241164 - 5242426 | 47297.5 |
| starch-binding associating with outer membrane | SAMN04488101_11696 | Not Available | - | 5242449 - 5244380 | 73290.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11697 | Not Available | - | 5244384 - 5247833 | 127507.0 |
| fecr family protein | SAMN04488101_11698 | Not Available | - | 5247957 - 5249168 | 45214.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11699 | Not Available | - | 5249260 - 5249868 | 23459.5 |
| ribosomal large subunit pseudouridine synthase d | SAMN04488101_116100 | Not Available | - | 5250057 - 5250743 | 25936.3 |
| ketopantoate hydroxymethyltransferase | SAMN04488101_116101 | Not Available | - | 5250743 - 5251558 | 29496.6 |
| carbamoyl-phosphate synthase small subunit | SAMN04488101_116102 | Not Available | + | 5251943 - 5253055 | 41028.8 |
| abc-2 type transport system atp-binding protein | SAMN04488101_116103 | Not Available | + | 5253178 - 5253948 | 28736.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.